BAC Information

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BAC

Clone NameMSMg01-463G03
Chromosome19 (Build37)
Map Location 58,662,627 - 58,663,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043038, Atrnl1, Gfra1, LOC100043503, 1700011F14Rik
Downstream genePnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463G03.T7 (MSMg01no463_g03.b1)MSMg01-463G03.TJ (MSMg01no463_g03.g1)
ACCAG548048AG548049
length748764
length of high quality
(start - end)
243 (78 - 320)463 (81 - 543)
definitionCHROMAT_FILE: MSMg01no463_g03.b1 PHD_FILE: MSMg01no463_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:46 2005CHROMAT_FILE: MSMg01no463_g03.g1 PHD_FILE: MSMg01no463_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTGTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATGC
GCGGAATTCTTTGTTCTGTCATGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCCGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTATTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTATGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAATTTTTCTTTCTTGTTCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGCGCCTCTGGTTTTAAGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATT
TGCATTCTTCTACATGACAACAACCAGTTGTGCCAGCACCTATTGTTGAA
GATGCTGTCTTTCTTCCACTGGATGGATTTAGCTCCCTTGTCGAATATCA
AGTGACCTTACGTGTGTGGTCTCCTTTCTGGCTGCTCCATCCCATTCCAT
TGTGCTTACTTGACTGTCTTTACACCCCTCTCTGTCTTTTTTCTCCTCAT
TATTTTTTGTTTCTTTTTTTTCATATCCACCCTTGACGTTTTCTCTTTTA
CCCCTTTTTTCTTGACTTGTTTTACTTCGCTTATTTTTCTCACTTTTG
NCCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTCCAAGTGAATTACAAA
CCTCAACATAAAACCAGATACACTGAGCCTGATAAAAGAGAAATCAGGGA
ATAGCCTTCAATGTGTCACCACAGGAGACACTTTCTAAATAATACATGGA
TAGTGCAGACACTAAGATCCACCATTAGTAAATGGGACCCCATGAAACGG
TAAGGCATCTTCTGTAAGTGAGAGAACACAATCAACAACTCCAGCATGAG
TTAGAGGATGGGACTCAGGTTCTCAGGCTTTTGCATCGAGCCCTTGCTGA
CTGAGCTATCCTTGAGGTTGAGGAAACTATGAAGTAGGAAGGAATGGCCT
CCATGTAGTCTCAGATGGGTGGGTGGGCCAACAAATCTGAAACCGTGCGG
GCTTTCAGGCTCAGAAGGAAGCCATGTGAGAGGACAGGGACTCGCTGATT
CAAATTAAATATGTTGAGCTTCATTGAATAGAGACACATGAGGATAGTTG
GTATCAGAGAGCTCTTCTACAACTAAGCTTACGGTGTCTGACCTGTGAGG
TGGGTGCCAGTTATTGCCCTATACTTTGCTATTTCGCTTTTGATTCCTGG
TATAACTAACACAAGCTCCATGCTTTTACTCGGCCTGTATTGCCCGTTGA
TGTATACCCATTCCCCTCTATCCTTTTTATCCATCCAACGTACTCCCCTC
TCTTCCTCATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_g03.g1 MSMg01no463_g03.g1 CHROMAT_FILE:
MSMg01no463_g03.g1 PHD_FILE: MSMg01no463_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:46 2005
         (463 letters)



>mm_chr19_58662427_58663289
          Length = 863

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtccaagtgaattacaaacctcaacataaaaccagatacactgagcctgataaaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtccaagtgaattacaaacctcaacataaaaccagatacactgagcctgataaaagag 260

                                                                       
Query: 61  aaatcagggaatagccttcaatgtgtcaccacaggagacactttctaaataatacatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcagggaatagccttcaatgtgtcaccacaggagacactttctaaataatacatgga 320

                                                                       
Query: 121 tagtgcagacactaagatccaccattagtaaatgggaccccatgaaacggtaaggcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtgcagacactaagatccaccattagtaaatgggaccccatgaaacggtaaggcatct 380

                                                                       
Query: 181 tctgtaagtgagagaacacaatcaacaactccagcatgagttagaggatgggactcaggt 240
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tctgtaagtgagaggacacaatcaacaaccccagcatgagttagaggatgggactcaggt 440

                                                                       
Query: 241 tctcaggcttttgcatcgagcccttgctgactgagctatccttgaggttgaggaaactat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcaggcttttgcatcgagcccttgctgactgagctatccttgaggttgaggaaactat 500

                                                                       
Query: 301 gaagtaggaaggaatggcctccatgtagtctcagatgggtgggtgggccaacaaatctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagtaggaaggaatggcctccatgtagtctcagatgggtgggtgggccaacaaatctga 560

                                                                       
Query: 361 aaccgtgcgggctttcaggctcagaaggaagccatgtgagaggacagggactcgctgatt 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 aaccgtgcgggctttcaggctcagaaggaagccatgggagaggacagggactcgctgatt 620

                                                      
Query: 421 caaattaaatatgttgagcttcattgaatagagacacatgagg 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaattaaatatgttgagcttcattgaatagagacacatgagg 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)