BAC Information

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BAC

Clone NameMSMg01-463H01
Chromosome19 (Build37)
Map Location 55,995,608 - 56,166,132
singlet/doubletdoublet
Overlap geneTcf7l2, LOC100043484
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Ppnr
Downstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463H01.T7 (MSMg01no463_h01.b1)MSMg01-463H01.TJ (MSMg01no463_h01.g1)
ACCAG548092AG548093
length752834
length of high quality
(start - end)		448 (76 - 523)209 (80 - 288)
definitionCHROMAT_FILE: MSMg01no463_h01.b1 PHD_FILE: MSMg01no463_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:51 2005CHROMAT_FILE: MSMg01no463_h01.g1 PHD_FILE: MSMg01no463_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,165,685 - 56,166,132)(55,995,608 - 55,995,816)
sequence
CCACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATGATTTTCCCGGAAGCTGACCTCTGCTCAGACTCTGGTCT
AACACTTTCTATCTTCAGTCTTGCTCAGGCCTCTAGTAAGACACTCTGGT
TCAAACTATTGCCAACAGCCATGTTGTTAGCCTCCTTGGTACCACCTCCC
AGTGTCCTACCTTCCAACGTGTTCTTACAAGACCCTAAACTACCCAGGTA
CTTCTCTGACCCTGAGGTGCTCTTTCAAAAGTGGCTCAGTGGCTCCCTCT
TGTTCGAGAAAAGAACCCTTCACCCAGTTCAGCTCATTTCCTTCTCAGCC
ACCAGTGCCCTAGGAAGTCAGCATGACCCGCCAATCTCTTCAGGATGACT
CCTGACAGTTTGTGGTCCTAGATGGTAATATGGATTCTAAGAGTATCTGA
CCTGAGAAGTTCTACACTGAGGCCATGTCTGACAAACATAGCAAGAGTAT
GCCAACACAGGGGTGCCTATAGGTCAGGGGTTCTGATGTCCCAGTCCCCT
GAAGCTGCTACAACCATCATAATCAATGTCACTCTTCTTGAATTATGCAG
AGTCCCACACTTGTGAATTACGGGTAAACATTTGCGGCACTGTTTCTCCT
CGGAGTCTGTGTAACTCCCATTTCTAAGACAAGCCTAATTTTCTATCGGT
CCTAGAACCTGTTAATGAATAACCATGGCTTCCTATTTCTCTCGATTATG
CG

CCCCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAAAGAGACAGGCAGACT
TGGTGGCAGTGTCAGAAGCATTCGAGTCTGACTTGCAGGGAGTCCCTTAG
ACACTGTCCAAAGCCTTCTGTGATGTGCTCTCTAGACTTTTCAGAAGGTT
CCCATGGCAATGCCCTGACTTCCCCTTACTACTGCATGGGAAGGTAGCTG
GCTAATAGGAGCCACTGAGGTAATGGGAGGGATAGTTTATAGGCAATTCG
GATGCAGGACTGTGGGAACTTGATCTCTTGGTTCTCAGGCTCCTCCTGTC
TCGGCGTCTCGTTATACACTTGTGACAATGTGCGCTTGCTCCTTCCTTCT
GCGCTCTAGGGAACACTGTGGTCTCCAATAATTTTTCTTCTTGATTTCTT
TGTTTTATTTTGACTCTGACGTTGAAACGGTTTGATTCTATTTCTTTTCC
CCTCTTTTATATTTTATACTATCCCCCATTTTCTAACCATTCTTCTCTAA
CTTGTTTTCTCTCCCGGCACCTTTTCTTTTCTGTTTATCTTGTTTTTCTT
TTCCCCAGCGTTCCTCACTTTGACTTATCCTCTTATAATCTGGTACACTT
CTCTTGTGTTTTTTCACCCATTTTTATATGTTTTCCCATCCCTTCTTTTT
CACCGCTTACCTTTCTATTATCATCCTCTTATATTCCCTATATTATTCTT
TCTTTATTATATCTTTATTTCTTAATCCTCTCCCCTCTCATTCCTCCTTT
TCACACCTACCTCATTACTCCTTTCTCTACATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_h01.b1 MSMg01no463_h01.b1 CHROMAT_FILE:
MSMg01no463_h01.b1 PHD_FILE: MSMg01no463_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:51 2005
         (448 letters)



>mm_chr19_56165485_56166332
          Length = 848

 Score =  828 bits (428), Expect = 0.0
 Identities = 443/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgacctctgctcagactctggtctaacactttctatcttcagtcttgctcaggcctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctgacctctgctcagactctggtctaacactttctatcttcagtcttgctcaggcctcta 589

                                                                       
Query: 61  gtaagacactctggttcaaactattgccaacagccatgttgttagcctccttggtaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtaagacactctggttcaaactattgccaacagccatgttgttagcctccttggtaccac 529

                                                                       
Query: 121 ctcccagtgtcctaccttccaacgtgttcttacaagaccctaaactacccaggtacttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctcccagtgtcctaccttccaacgtgttcttacaagaccctaaactacccaggtacttct 469

                                                                       
Query: 181 ctgaccctgaggtgctctttcaaaagtggctcagtggctccctcttgttcgagaaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 468 ctgaccctgaggtgctctttcaaaagtggctcagtggctccctcttgtttgagaaaagaa 409

                                                                       
Query: 241 cccttcacccagttcagctcatttccttctcagccaccagtgccctaggaagtcagcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cccttcacccagttcagctcatttccttctcagccaccagtgccctaggaagtcagcatg 349

                                                                       
Query: 301 acccgccaatctcttcaggatgactcctgacagtttgtggtcctagatggtaatatggat 360
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 348 acccgccaatctcttcaggatgactcctgacggtttgcggtcctagatggtaatatggat 289

                                                                       
Query: 361 tctaagagtatctgacctgagaagttctacactgaggccatgtctgacaaacatagcaag 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 288 tctaagagtatctgacctgagaagttctacactgagaccatgtctgacaaacatagcaag 229

                                       
Query: 421 agtatgccaacacaggggtgcctatagg 448
           ||| ||||||||||||||||||||||||
Sbjct: 228 agtgtgccaacacaggggtgcctatagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no463_h01.g1 MSMg01no463_h01.g1 CHROMAT_FILE:
MSMg01no463_h01.g1 PHD_FILE: MSMg01no463_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:51 2005
         (209 letters)



>mm_chr19_55995408_55996016
          Length = 609

 Score =  404 bits (209), Expect = e-117
 Identities = 209/209 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcaaagagacaggcagacttggtggcagtgtcagaagcattcgagtctgacttgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaaagagacaggcagacttggtggcagtgtcagaagcattcgagtctgacttgcagg 260

                                                                       
Query: 61  gagtcccttagacactgtccaaagccttctgtgatgtgctctctagacttttcagaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtcccttagacactgtccaaagccttctgtgatgtgctctctagacttttcagaaggt 320

                                                                       
Query: 121 tcccatggcaatgccctgacttccccttactactgcatgggaaggtagctggctaatagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccatggcaatgccctgacttccccttactactgcatgggaaggtagctggctaatagg 380

                                        
Query: 181 agccactgaggtaatgggagggatagttt 209
           |||||||||||||||||||||||||||||
Sbjct: 381 agccactgaggtaatgggagggatagttt 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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