Query= MSMg01no463_j05.b1 MSMg01no463_j05.b1 CHROMAT_FILE:
MSMg01no463_j05.b1 PHD_FILE: MSMg01no463_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:02 2005
(489 letters)
>mm_chr19_28677256_28678146
Length = 891
Score = 868 bits (449), Expect = 0.0
Identities = 477/487 (97%), Gaps = 2/487 (0%)
Strand = Plus / Plus
Query: 5 gaattcacaatctttctcctgcctcagtctcctcaaagcagtgaaaaaaccggtatgata 64
|||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 205 gaattcacaatcttcctcctgcctcagtctcctcaacgcagtgaaaaaacaggtatgata 264
Query: 65 accccc--aaaacatattttaataaatttaaatggttgagacattaaacattattttcta 122
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 acccccaaaaaacatattttaataaatttaaatgattgagacattaaacattattttcta 324
Query: 123 attttatttccataggatatgtcaaataatctttttatggattggactgaacagttaagc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attttatttccataggatatgtcaaataatctttttatggattggactgaacagttaagc 384
Query: 183 ctaaatttttaacatcatttgcattgggaaatgttcaaagttctacacaactaacttata 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaaatttttaacatcatttgcattgggaaatgttcaaagttctacacaactaacttata 444
Query: 243 aacaaactttcggaaccaccattttggaacaaacccatccctgtgctaaggattggtttt 302
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 aacaaactttcagaaccaccattttggaaccaacccatccctgtgctaaggattggtttt 504
Query: 303 gccctgtgaatccagcaaccctctgagcaggcttattaatacaacagccaagctgagtcc 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 gccctgtgaatccagcaaccctctgagcaggcttattaacacaacagccaagctgagtcc 564
Query: 363 ttttgactatcccatgccatttaaccatgtgtccattcactcacatatgcgtgcattaat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttgactatcccatgccatttaaccatgtgtccattcactcacatatgcgtgcattaat 624
Query: 423 gcattcagcaaatatttataaaatgcctattttggcaaggcactgaaaataaaggtgaga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 gcattcagcaaatatttataaaatgcctattttggcaaggcactgaaaataaaagtgaga 684
Query: 483 tgccagg 489
|||||||
Sbjct: 685 tgccagg 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 891
Length adjustment: 10
Effective length of query: 479
Effective length of database: 881
Effective search space: 421999
Effective search space used: 421999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_j05.g1 MSMg01no463_j05.g1 CHROMAT_FILE:
MSMg01no463_j05.g1 PHD_FILE: MSMg01no463_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:02 2005
(492 letters)
>mm_chr19_28847823_28848713
Length = 891
Score = 928 bits (480), Expect = 0.0
Identities = 489/492 (99%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 1 ttgtagaatataaaaatcacatggaatgtatctttacttatttttctgtcgccaaacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttgtagaatataaaaatcacatggaatgtatctttacttatttttctgtcgccaaacctt 632
Query: 61 ccatggacattgtatataattcctataaaaacaattccaagttctgttgctttctctttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ccatggacattgtatataattcctataaaaacaattccaagttctgttgctttctctttc 572
Query: 121 acttgttcatactgtttttaatgactagctttcttcctttgaccaatgacttccctggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 acttgttcatactgtttttaatgactagctttcttcctttgaccaatgacttccctggct 512
Query: 181 ctcttctgtctttttagccttgcacagtcctgtcacctcagagactagttatcctgaggc 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctcttctgtcttttcagccttgcacagtcctgtcacctcagagactagttatcctgaggc 452
Query: 241 catctctctgcccttccatattgtttgtctaacagtgcagggctctccagctcctaggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 catctctctgcccttccatattgtttgtctaacagtgcagggctctccagctcctaggct 392
Query: 301 ggtctactttcctgtgtcatacttacctgctgcttctcctcattcaacctgagagacatt 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 391 ggtctactttcctgtgtcatacttacctgctgcttctcctcattcaacttgagagacatt 332
Query: 361 ttgagagaacagacgttgctgggaaaatccatctctactcaccgcactatgggaaaagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttgagagaacagacgttgctgggaaaatccatctctactcaccgcactatgggaaaagtt 272
Query: 421 ttgtctctcttcttctagaacttcattaaattcatattctttctttttttcactacagtg 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 271 ttgtctctcttcttctagaacttcattaaattcatattcttt-tttttttcactacagtg 213
Query: 481 actatatgctta 492
||||||||||||
Sbjct: 212 actatatgctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
