MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-465M20
Chromosome	19 (Build37)
Map Location	52,710,874 - 52,711,260
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100042928, LOC668536, LOC100042936, Ins1
Downstream gene	LOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100042928 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042928
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC668536 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668536
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 40 ESTs, 5 Proteins pseudo : _no_value

name	LOC100042936 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042936
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Ins1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16333 MGI:96572
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043450 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043450
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Xpnpep1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170750 MGI:2180003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668545 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668545
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC674277 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:674277
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Add3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27360 MGI:1351615
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700001K23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69319 MGI:1916569
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Mxi1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17859 MGI:97245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Smndc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76479 MGI:1923729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dusp5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240672 MGI:2685183
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 5 Proteins

name	LOC100043462 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043462
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 314 ESTs, 2 Proteins

name	Smc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13006 MGI:1339795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ins1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606344 GeneID:16333 MGI:96572
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : insulin I transcript_id : NM_008386.3

name	LOC100043450 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270566 GeneID:100043450
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical protein LOC100043450 transcript_id : XM_001480540.1

name	Xpnpep1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476273 GeneID:170750 MGI:2180003
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : X-prolyl aminopeptidase (aminopeptidase P) 1, soluble transcript_id : NM_133216.2

name	LOC668545 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270515 GeneID:668545
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC668545 transcript_id : XM_001487806.1

name	Add3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542110 GeneID:27360 MGI:1351615
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adducin 3 (gamma) transcript_id : NM_013758.2

name	1700001K23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94406040 GeneID:69319 MGI:1916569
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA 1700001K23 gene transcript_id : XM_001002211.1

name	Mxi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114520595 GeneID:17859 MGI:97245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Max interacting protein 1 transcript_id : NM_001008542.2

name	Mxi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114520598 GeneID:17859 MGI:97245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Max interacting protein 1 transcript_id : NM_010847.3

name	Mxi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114520597 GeneID:17859 MGI:97245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Max interacting protein 1 transcript_id : NM_001008543.2

name	Smndc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130023 GeneID:76479 MGI:1923729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : survival motor neuron domain containing 1 transcript_id : NM_172429.2

name	Dusp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270568 GeneID:240672 MGI:2685183
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 5 Proteins product : dual specificity phosphatase 5 transcript_id : XM_140740.8

name	LOC100043462 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270570 GeneID:100043462
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 314 ESTs, 2 Proteins product : similar to nuclear transport factor 2 transcript_id : XM_001480585.1

name	Smc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:36031034 GeneID:13006 MGI:1339795
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : structural maintenace of chromosomes 3 transcript_id : NM_007790.2

name	Ins1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606345 CCDS:CCDS29898.1 GeneID:16333 MGI:96572
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005179 - hormone activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006006 - glucose metabolism [Evidence IEA]; GO:0015758 - glucose transport [Evidence TAS]; GO:0007582 - physiological process [Evidence IEA] codon_start : 1 product : insulin I protein_id : NP_032412.3

name	LOC100043450 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270567 GeneID:100043450
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480590.1

name	Xpnpep1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42476274 CCDS:CCDS29899.1 GeneID:170750 MGI:2180003
definition	GO_function : GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008451 - X-Pro aminopeptidase activity [Evidence IEA] codon_start : 1 note : cytosolic aminopeptidase P product : X-prolyl aminopeptidase (aminopeptidase P) 1, soluble protein_id : NP_573479.2

name	LOC668545 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270516 GeneID:668545
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001487856.1

name	Add3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542111 CCDS:CCDS29900.1 GeneID:27360 MGI:1351615
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IDA]; GO:0016020 - membrane [Evidence IDA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IDA] codon_start : 1 note : gamma adducin; cytoskeletal protein product : adducin 3 (gamma) protein_id : NP_038786.2

name	1700001K23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94406041 GeneID:69319 MGI:1916569
definition	codon_start : 1 product : hypothetical protein LOC69319 protein_id : XP_001002211.1

name	Mxi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114520596 GeneID:17859 MGI:97245
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : Max interactor 1 isoform b protein_id : NP_001008542.2

name	Mxi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754766 CCDS:CCDS29901.1 GeneID:17859 MGI:97245
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : Max interactor 1 isoform a protein_id : NP_034977.1

name	Mxi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57242751 GeneID:17859 MGI:97245
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 3 product : Max interactor 1 isoform c protein_id : NP_001008543.1

name	Smndc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369569 CCDS:CCDS29902.1 GeneID:76479 MGI:1923729
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0000245 - spliceosome assembly [Evidence IEA] codon_start : 1 product : survival motor neuron domain containing 1 protein_id : NP_766017.1

name	Dusp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270569 GeneID:240672 MGI:2685183
definition	codon_start : 1 product : dual specificity phosphatase 5 protein_id : XP_140740.4

name	LOC100043462 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270571 GeneID:100043462
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480635.1

name	Smc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:36031035 GeneID:13006 MGI:1339795
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0008278 - cohesin complex [Evidence ISS]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0000800 - lateral element [Evidence IDA]; GO:0016363 - nuclear matrix [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA]; GO:0000922 - spindle pole [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0045502 - dynein binding [Evidence ISS]; GO:0003777 - microtubule motor activity [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence ISS] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0051276 - chromosome organization and biogenesis [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0007126 - meiosis [Evidence IPI] [Evidence ISS]; GO:0007067 - mitosis [Evidence IEA]; GO:0007052 - mitotic spindle organization and biogenesis [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0007165 - signal transduction [Evidence ISS]; GO:0007062 - sister chromatid cohesion [Evidence ISS] codon_start : 1 product : chondroitin sulfate proteoglycan 6 protein_id : NP_031816.2

name	LOC100042928 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042928
definition	number : 1 pseudo : _no_value

name	LOC100042936 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042936
definition	number : 2 pseudo : _no_value

name	LOC100042936 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042936
definition	number : 1 pseudo : _no_value

name	LOC674277 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:674277
definition	number : 4 pseudo : _no_value

name	LOC674277 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:674277
definition	number : 3 pseudo : _no_value

name	LOC674277 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:674277
definition	number : 2 pseudo : _no_value

name	LOC674277 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:674277
definition	number : 1 pseudo : _no_value

name	LOC668536 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270565 GeneID:668536
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 40 ESTs, 5 Proteins product : similar to ribosomal protein L31 pseudo : _no_value transcript_id : XR_034741.1

clone name	MSMg01-391O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344F17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-357B15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-392O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130L15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-372D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305O16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-048F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120D21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-406G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518N02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-272C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425N14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-542E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008M03
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-465M20.T7 (MSMg01no465_m20.b1)	MSMg01-465M20.TJ (MSMg01no465_m20.g1)
ACC	AG549897	AG549898
length	810	773
length of high quality (start - end)	267 (181 - 447)	439 (63 - 501)
definition	CHROMAT_FILE: MSMg01no465_m20.b1 PHD_FILE: MSMg01no465_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:03 2005	CHROMAT_FILE: MSMg01no465_m20.g1 PHD_FILE: MSMg01no465_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:03 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTCCTAAG TTTCCAGTCTTGTGTGCTTTCCAAAATCTGTGGTAGTTAAAGTGAGAACA CACACACACACACATACACACACCAGCTCATACATTTGAAAGTTTGGTCC CCAGTTGGTGGAACTGGTTGGAAGGGATTAGTAGGTGTTGTCTTGCTAGA GGTGATATGCCACAAAGGACAGGTTTTAAGGCACTGTTTTCAACCTTCCT ACTACTGTGGCCCTTTAAAATAGCTCCTCCATTGCTAGTGGGATTGCAAA TTTGTACTTTCTCTCTGGAAATCATTCTGGCAGTTTATCAGAAAATTAGA AATAGTTCTACCTAAAGACCCAGCTATACCACTGCTGGGCATATACCCAA AAGATGTTCCACCATATCACAAGGACACATGTTCCACTATGTTCATAGCA GCCTTATGCATAATATGCAGAATCTGGAAACCACCCACATGTCCTTTGAC TTGAGAATGGATTATGAAATGTGGGTCACTTACACACTGAAGTACTACCC CCCAAAACAAAGTATTCTTGTTTTTCTTCTTGCCCCCCCCGGTTGTTTTA ACACTGTTTTTGGGTTTCAAAATCCCATACCTTTGGCCGTTTACTTTTTT CTTCTCTTTGTTTTGTGGGTTTATAAAAAATCCCCTCTCACCATTACTTC ATGCCCCTCAATTCTTATCTTCCTTCTCCCTCTCTTTTTTTGTATTTTTC TCTTTTTTCTCCTTGTATTAAAAATAATATACATCTCTCTTTTTTTTATT TCTCTCCCCG	GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXACATCAGAATGTGAGTACAAAAATCTCACGCCTTTCAG GTTTTCTTAATTTAATGAATCACATTAAATGAAAAGGTCACGTTTATCTT GGTGAGAAGGCCTGTGAATTTGCATGCAAGTGTCAATTTAAGTAGTAAGA AACACAATAAAGATAATAGTCTCAGTACTCCCTATGGGTCTCTGTCAGTC CTTGGGAGTCATACCCTCCCCCATTTCCAACCTTTCACAAAGATAATGGA TTCTCTGTCATAATAGTTTTGCCTCTGAGATGTCAGTGGGAACACACAGC ACATGATTATTTGGGATTATCTTCTTTCTCTTAGCAGACTATTCTTGCGG TTCTTCTGCAAGACAATAATAGTATCCTTTTTATTGTTGAGAATCATCTC ACTGATGGCTTACATCAAAATTTGTTATTCCTTTGGTAATTAAAGACATT AGAGACTGTCTTCTATTTGGGAACTTATGAATAGAATGTCTATAAAATTC GTTACAGAACTCTGCATGAAGTAAGTTTTCATTTCTCTATCCCAAACCCC AGGAGTGAAATTCCTGAATCCCATGGTACCTCTAGTTTTACCATGCAACT TTATATTGCTTAATTTTTTTAAAAATAACCAGCCAAATTTTGGAATGTTT GTGCCCGGTTGGAATTTGTGGGGGGCCCCCGTTTTTCTCCCCCTGCTTTA TCACCTCTTACCTATCCTTGTCN
quality values	Open. Hide. 23 30 34 30 13 18 13 14 18 22 29 33 33 33 59 26 19 12 12 10 7 6 6 7 7 8 8 18 18 22 16 14 15 18 16 20 30 59 59 35 31 31 28 31 31 47 27 21 11 9 9 13 12 17 11 12 22 30 32 47 46 46 46 48 50 53 53 57 59 42 42 42 42 42 42 48 50 50 50 50 53 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 37 37 32 35 37 42 48 37 37 22 24 10 17 10 19 15 20 22 18 18 16 15 12 18 11 13 13 16 15 13 13 19 28 26 32 32 23 29 23 22 22 31 31 23 31 32 34 41 21 18 14 21 14 25 17 26 26 34 34 30 30 24 31 23 23 14 15 15 34 21 23 10 19 9 12 12 10 15 28 29 37 43 43 43 43 43 43 43 48 59 59 59 59 59 57 59 59 59 57 68 68 68 68 68 68 54 54 57 57 57 57 57 57 54 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 68 68 59 48 42 35 35 42 42 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 57 57 57 48 48 48 59 59 59 59 59 57 48 48 48 59 59 59 59 59 57 59 59 47 47 42 47 47 47 48 48 59 59 59 59 59 32 32 15 18 8 8 8 8 8 8 12 23 28 37 59 41 50 47 48 48 48 48 57 57 43 43 43 43 48 57 57 57 59 47 40 36 25 29 43 44 57 47 34 28 13 13 15 28 30 39 35 35 37 37 46 46 54 54 48 54 54 57 57 57 57 57 57 47 43 43 57 57 59 48 47 47 39 39 37 44 42 43 42 42 35 37 43 43 42 44 44 48 30 34 18 18 18 30 29 42 28 33 28 40 44 44 23 23 23 36 37 46 47 39 35 35 42 43 54 54 48 48 48 48 48 43 43 39 39 28 34 23 23 23 34 30 37 30 28 28 25 24 22 24 20 29 26 23 12 11 18 15 15 15 10 13 13 24 32 32 36 39 32 30 22 23 18 22 17 18 24 24 18 17 19 14 19 14 14 14 14 17 19 14 14 14 15 19 13 10 10 13 17 10 8 8 8 8 8 8 9 9 9 9 12 12 16 18 18 10 10 8 8 8 8 10 11 12 14 10 11 10 12 8 8 8 11 8 9 9 9 8 8 8 8 8 8 9 10 10 8 8 8 13 12 11 11 10 9 10 16 16 10 8 8 8 8 8 9 9 8 8 7 6 8 6 8 8 8 8 10 8 8 8 8 8 11 11 15 15 15 16 18 15 14 19 10 10 13 13 8 8 9 8 6 6 6 8 6 6 8 8 9 9 15 19 11 8 8 8 8 8 8 8 8 10 6 8 6 9 10 12 10 8 8 10 10 11 11 11 14 9 10 9 9 10 14 13 13 11 11 10 11 17 16 15 12 11 11 11 10 10 10 8 11 8 8 8 8 8 6 6 7 13 13 20 17 12 10 8 6 6 8 6 8 8 9 11 8 6 9 6 6 6 7 10 10 10 10 10 8 8 10 11 11 11 8 8 6 6 6 6 8 8 9 9 9 8 8 8 9 9 9 11 12 10 10 10 10 9 10 8 8 8 12 10 11 8 8 8 10 9 14 19 19 14 15 8 8 8 8 8 8 16 9 12 9 9 9 10 12 13 21 26 13 10 10 10 9 9 9 9 9 9 10 10 10 8 8 8 6 6 7 8 8 8 8 8 8 8 8 8 8 8 10 10 9 10 19 17 17 11 13 8 8 8 15 11 10 9 10 8 8 8 10 8 8	Open. Hide. 10 10 10 19 21 31 37 44 44 39 39 44 39 39 44 37 27 27 9 9 6 6 6 6 8 8 10 11 21 21 34 48 48 48 44 36 36 36 37 33 33 46 47 43 33 20 12 9 10 10 10 20 19 32 47 47 28 29 30 30 36 36 42 36 36 47 50 50 50 50 50 53 53 53 53 53 53 54 54 54 54 54 54 54 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 51 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 50 50 50 50 50 51 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 59 57 54 57 57 57 50 50 50 50 51 51 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 57 62 62 62 62 62 62 62 62 68 68 68 68 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 52 52 52 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 57 57 57 57 59 57 57 68 68 68 68 68 68 68 68 68 57 57 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 59 48 48 48 44 48 43 57 57 57 59 68 68 59 59 59 59 57 57 59 59 47 47 57 59 59 48 48 48 59 46 43 47 47 48 48 57 57 57 43 43 43 46 59 43 54 54 48 53 48 48 48 40 40 28 28 30 37 28 23 23 32 32 37 43 43 43 43 40 40 40 41 39 37 34 28 32 37 34 36 28 30 30 34 34 31 31 43 41 37 32 39 31 22 22 32 34 35 36 31 41 37 27 19 18 23 23 25 21 31 35 37 34 32 20 20 20 22 22 11 11 11 17 15 24 24 16 18 22 30 25 26 17 17 17 23 17 17 14 22 19 11 11 14 16 16 14 21 20 12 12 11 11 11 11 10 9 9 9 15 13 18 10 11 19 9 9 9 8 8 8 8 11 12 14 16 14 12 11 11 16 16 15 12 19 21 19 13 11 9 9 9 12 11 11 14 23 10 10 10 8 9 8 10 12 15 13 13 13 12 10 15 15 14 18 14 16 13 10 10 10 10 10 11 10 8 8 8 8 8 8 8 8 10 13 12 10 11 11 16 11 11 11 17 9 11 8 10 8 8 8 8 10 10 10 12 10 10 8 8 8 8 8 8 10 10 12 12 10 7 6 6 6 6 8 15 11 10 10 8 8 8 8 9 8 9 9 9 9 9 19 12 8 8 8 8 8 10 10 8 8 8 8 8 8 9 9 11 9 13 11 11 11 8 8 7 6 8 8 6 6 6 6 8 8 11 11 10 10 10 10 12 10 10 10 8 8 8 8 8 8 8 10 11 11 9 8 8 8 8 8 8 11 11 19 12 12 10 17 11 16 10 10 10 10 13 10 10 6 6 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no465_m20.g1 MSMg01no465_m20.g1 CHROMAT_FILE:
MSMg01no465_m20.g1 PHD_FILE: MSMg01no465_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:03 2005
         (439 letters)



>mm_chr19_52710874_52711712
          Length = 839

 Score =  741 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatcagaatgtgagtacaaaaatctcacgcctttcaggttttcttaatttaatgaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acatcagaatgtgagtacaaaaatctcacgcctttcaggttttcttaatttaatgaatca 328

                                                                       
Query: 61  cattaaatgaaaaggtcacgtttatcttggtgagaaggcctgtgaatttgcatgcaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cattaaatgaaaaggtcacgtttatcttggtgagaaggcctgtgaatttgcatgcaagtg 268

                                                                       
Query: 121 tcaatttaagtagtaagaaacacaataaagataatagtctcagtactccctatgggtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcaatttaagtagtaagaaacacaataaagataatagtctcagtactccctatgggtctc 208

                                                                       
Query: 181 tgtcagtccttgggagtcataccctcccccatttccaacctttcacaaagataatggatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tgtcagtccttgggagtcataccctcccccatttccaacctttcacaaagataatggatt 148

                                                                       
Query: 241 ctctgtcataatagttttgcctctgagatgtcagtgggaacacacagcacatgattattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ctctgtcataatagttttgcctctgagatgtcagtgggaacacacagcacatgattattt 88

                                                                       
Query: 301 gggattatcttctttctcttagcagactattcttgcggttcttctgcaagacaataatag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 87  gggattatcttctttctcttagcagactattcttgcggttcttctgcaagacaatagtag 28

                                      
Query: 361 tatcctttttattgttgagaatcatct 387
           |||||||||||||||||||||||||||
Sbjct: 27  tatcctttttattgttgagaatcatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information