Query= MSMg01no466_c13.b1 MSMg01no466_c13.b1 CHROMAT_FILE:
MSMg01no466_c13.b1 PHD_FILE: MSMg01no466_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:32 2005
(235 letters)
>mm_chr19_24889169_24889804
Length = 636
Score = 369 bits (191), Expect = e-107
Identities = 224/235 (95%), Gaps = 3/235 (1%)
Strand = Plus / Plus
Query: 1 gaacaccacatgccacaaccagacctaatatgtggtcttggataggtgtttttgaaaaca 60
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gaacaccacatgtcacaaccagacctaatgtgtggtcttggataggtgtttttgaaaaca 260
Query: 61 agaatgtagctccgtggcagagagcttgcctagcaggttctaggctctgggtttgatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatgtagctccgtggcagagagcttgcctagcaggttctaggctctgggtttgatcaa 320
Query: 121 atccatttcccacttcaagggcccccagaatgaacctcctgtgggtgctctctgtcattt 180
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 atccaggtcccacttcaagggcccccagaatgaacctcctgggggtgctctctgtcattt 380
Query: 181 cattcttgta-ctcatc-tgcagtgtagtatccctgtttcaactcaccagatgaa 233
|||||||| | | || | |||||||||| ||||||||||||||||||||||||||
Sbjct: 381 cattcttgcaac-caacctgcagtgtagcatccctgtttcaactcaccagatgaa 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 636
Length adjustment: 9
Effective length of query: 226
Effective length of database: 627
Effective search space: 141702
Effective search space used: 141702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no466_c13.g1 MSMg01no466_c13.g1 CHROMAT_FILE:
MSMg01no466_c13.g1 PHD_FILE: MSMg01no466_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:32 2005
(237 letters)
>mm_chr19_25093272_25093908
Length = 637
Score = 290 bits (150), Expect = 4e-83
Identities = 231/294 (78%), Gaps = 57/294 (19%)
Strand = Plus / Minus
Query: 1 ttctagttatagatgattgtgaggtgccgtgtgggttctagtattcaaaccgaggtcctc 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 600 ttctagttatagatgattgtgaggtgccgtgtgggttctagcaatcaaaccgaggtcctc 541
Query: 61 tggaagagcagcccgtgttcttaaccactgagccatct-------ctcggg--gc----- 106
|||||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct: 540 tggaagagcagcccgtgttcttaagcactgagccatctctccagactcgggaagctaaat 481
Query: 107 -------------------------------------------aatgctgtctatgaagg 123
||||||||||||||| |
Sbjct: 480 gtaaacataagaaaaccaaaataagtaccccattcctaagggaaatgctgtctatgaaag 421
Query: 124 tgtcatgtctcagaatctcctacgtagaagacagataagtagaacgttatgacttgccgt 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 420 tgtcatgtctcagaatctcctacgtagaagacagataagtagaacattatgacttgccgt 361
Query: 184 gagaactcttagggctgtgaaagtaggagggggctgtgtgggaagaagggaaca 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 360 gagaactcttagggctgtgaaagtaggagggggctgtgtgggaagaaaggaaca 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
