BAC Information

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BAC

Clone NameMSMg01-466K13
Chromosome19 (Build37)
Map Location 17,302,367 - 17,302,652
singlet/doubletsinglet
Overlap genenone
Upstream geneGnaq, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466K13.T7 (MSMg01no466_k13.b1)MSMg01-466K13.TJ (MSMg01no466_k13.g1)
ACCAG550554AG550555
length848839
length of high quality
(start - end)
---285 (81 - 365)
definitionCHROMAT_FILE: MSMg01no466_k13.b1 PHD_FILE: MSMg01no466_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:13 2005CHROMAT_FILE: MSMg01no466_k13.g1 PHD_FILE: MSMg01no466_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCTCTCACCAATTTGCGGGCGCGAAGAGGAGTCACATTCCCAAATGG
AGTGGNGGAANNCTTGGTACCAATGATGAGAGCANNGNNNNAATGGGGGT
TATTTGGATTTTCTTGAAGTCCACCTTTCTCGAGCTCTTTATATATGGTT
GGATATGATGTACCCTATCTTGATTTATGGATATGGGAAAGATCCTCTTC
CCAATCTTGTTGTGTGGGCTTTTTGTCCTGATTGACAGTGTCTCTGGGCC
TTGCCGAAACTTTGTTATTTTCATTAGGTCCTATTCGGCAAGACTTGATC
TTAATGCATAAGCCATTGCTGAGCCGGTCATTTTTTTTTTTCCGGAGACC
ATATCTTCAAGCGTGGTCCCCTTTTTCTTCTCTATCACTTTCCCTTGTCT
CGGTCTTTGATGTTTCGTCCCTTTTTCTCCTGCTTTCATTCCCCCCCCGC
TTGTACGGAGATACTTCTTGTGTTCTATTTTCTATTCCCTCCTCGCTATT
GTGAGCGCTCTTTGTTCCCCCCCGTTTCCCGCCTGTTATCCAATATTTAT
TTACTCCCTTTCTCTTCAGCTATGTGTTAGCTTCCCACTCTACATGACGC
TTTAGTCTTTTTTTCCCTCTCATTCTTCACATTCCCCTTCCTCTTCTCTT
TTCATTTTTTTTTATTCTTTTTCTCTTTCTCTCTCTTTTCTTTCCCTTCT
TCATTTCCTTCCTCTCCTCTTTTTTTGTTTTTCTTTTCTACCCCCGCTCT
CTTTTTTTTTACCCCTTCGTTTTTTTACCTGTGTCCTCTGTTTTTTTGCT
CTCCTCCCTCACATCCTATATTTCTCTATTCCCTCCCTTTTATATTCC
NTTTCCCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGGAAACAGAAGAAAAA
ATGACAGAAAAAAGATGGAGAAATACCTTCACTAACAAGTAAGAAGGAAC
AAGAGTCCAAGGAATTTGCAAAGGGATTGGAGTATGACAAACAGACTTTT
AGGGTGGCTTCAACAATCCCTGCTTCTGGATTTGTGTGTCTTGTGTGACA
CTCTGCCATTGAGTGGGTTGAATTTATGGACTTGCTTAGGATAAGGTAAC
AGAACGACTAAGAAAATATTTCTTTTGTTGTAGATGTCATTATCAAAGAG
GAGGAGGAAGAGGAAGAGGAGGAGAAGTTCTTTTCTTTTCTTTCGTCTCC
CTGCCTCTGTTTTTTTATCCGCACCCCCCCCCCTTTTTTCCTCTTCCCTC
CATTGTCCCCTCTCCCTTTGTGTCCTCCCTTCGTCCCCAGTTTTCTCTTT
ATCTTTATCCCCCCTTATACTCCTTTATCCTTTTTTTCTCTCCCTTTTCA
TCCCCCACTTGATTTCTAATACTCATTCTCCCCCCTCTCTTACTTATCTA
CTATCTACCCCATCCTTCTCCACTTTTGTACTCCCCGTCGCCCTCCCCTT
TTTTATATTTTTTCCCTTTCTACTCTCTCTCTATCTCACTTACCTCCCTA
TCCTGTCTCTCCCTTCCTCCTTCTTCTTTTTTCCCCTTTATTTCTTCTAC
TTTCTTCCTCCCATCCCCCTTCACCTAATGCCTTTTGTACCTTTTCTTCC
CCCTCTTGTTTCTCCTCCTTTTCATTTTATCTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_k13.g1 MSMg01no466_k13.g1 CHROMAT_FILE:
MSMg01no466_k13.g1 PHD_FILE: MSMg01no466_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:13 2005
         (285 letters)



>mm_chr19_17302350_17303035
          Length = 686

 Score =  484 bits (250), Expect = e-141
 Identities = 277/286 (96%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagggaaacagaagaaaaaatgacag-aaaaaagatggagaaataccttcactaacaag 59
           |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct: 303 ctagggaaacagaagaaaaagtaacagaaaaaaagatggagaaataccttcactaacaag 244

                                                                       
Query: 60  taagaaggaacaagagtccaaggaatttgcaaagggattggagtatgacaaacagacttt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 taagaaggaacaagagtccaaggaatttgcaaagggattggagtatgacaaacagacttt 184

                                                                       
Query: 120 tagggtggcttcaacaatccctgcttctggatttgtgtgtcttgtgtgacactctgccat 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 taggctggcttcaacaatccctgcttctggatttgtgtgtcttgtgtgacactctgccat 124

                                                                       
Query: 180 tgagtgggttgaatttatggacttgcttaggataaggtaacagaacgactaagaaaatat 239
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 123 tgagtgggttgaatttatggacttgcataggataaggtaacagaacgactaagaaaatat 64

                                                         
Query: 240 ttcttttgttgtagatgtcattatcaaagaggaggaggaagaggaa 285
             |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 63  cacttttgttatagatgtcattaccaaagaggaggaggaagaggaa 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space:   186852
Effective search space used:   186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)