Query= MSMg01no467_d11.b1 MSMg01no467_d11.b1 CHROMAT_FILE:
MSMg01no467_d11.b1 PHD_FILE: MSMg01no467_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:01 2005
(457 letters)
>mm_chr19_15642712_15643568
Length = 857
Score = 712 bits (368), Expect = 0.0
Identities = 435/466 (93%), Gaps = 16/466 (3%)
Strand = Plus / Plus
Query: 1 ccttctatgtcttctgctgaataatcttctccgatctaacatcttctcaagtagtttttc 60
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ccttctatgccttctgctgaataatcttcttcgatctaacatcttctcaagtagtttttc 260
Query: 61 ttcattgcaatcaagtgaaatacttgctctcagaattgttgctagaaagcagacccttag 120
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 261 ttcattgcgatcaagtgaaatacttggtctcagaagtgttgctagaaagcagacctttag 320
Query: 121 ggaatgggttccagtctaggtgagatgaactctccaagtcatcatggctaaattcggttg 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ggaatgggttccagtctaggtgagatgaactctccaagtcatcatggcaaaattcggttg 380
Query: 181 cctttccacactaggttaatagaatctgtatgagtggttcaaatggagttctattttttt 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttccacaccaggttaatagaatctgtatgagtggttcaaatggagttcta------- 433
Query: 241 ------attttgtatctatatgttcatacaaacagcaacaacaatgaattttaagtctgc 294
|||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 434 ggaagcattttgtatctatatgttcatacaaacagcaataaaaatgaattttaagtctgc 493
Query: 295 tctatcaggatactgatgctttagaaaggaaactttaattaaaccagaagtttgtttgtt 354
|||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tctaccaagatactaatgctttagaaaggaaactttaattaaaccagaagtttgtttgtt 553
Query: 355 tgttt---aatttactgggaggggacatggtaggagaagtttaggtggagctggactgag 411
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 554 tgttttttaatttactgggaggggacttggtaggagaagtttaggtggagctggactgag 613
Query: 412 aggcagatatgatcaaaatgtgcccatatatacatgaaattctcaa 457
|||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 614 aggcagatatgatcaaaatgtgtccatatatacatgaaattctcaa 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_d11.g1 MSMg01no467_d11.g1 CHROMAT_FILE:
MSMg01no467_d11.g1 PHD_FILE: MSMg01no467_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:01 2005
(561 letters)
>mm_chr19_15778473_15779433
Length = 961
Score = 938 bits (485), Expect = 0.0
Identities = 500/507 (98%), Gaps = 5/507 (0%)
Strand = Plus / Minus
Query: 47 ccaagctccatccaatatttggctgctcccttctctcttaatcacatgtacccatttgtg 106
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 961 ccaagctccatccaatatttggctgctcccttctctcttaatcacgtgtacccatttgtg 902
Query: 107 tcactgccaaatgaaggttggcttgcatctcttcccactggctgctgctgggaatgtaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tcactgccaaatgaaggttggcttgcatctcttcccactggctgctgctgggaatgtaag 842
Query: 167 ggtgaaagatttctacagagaagatcaagaacaatgcatgctttaaaatatgtagtcagc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ggtgaaagatttctacagagaagatcaagaacaatgcatgctttaaaatatgtagtcagc 782
Query: 227 catgctgaaattaat--attttatttaattaatctaaagagtgtgcttgatattttattt 284
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 781 catgctgaaattaataca---tatttaattaatctaaagagtgtgcttgatattttattt 725
Query: 285 agcagtttaaagtacttttaggtatgtaattttcagatttttaggaaacagaccacacaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agcagtttaaagtacttttaggtatgtaattttcagatttttaggaaacagaccacacaa 665
Query: 345 ggtttatttatattgctttaatccttttcagacttgataagcatataaaacacgtttatg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ggtttatttatattgctttaatccttttcagacttgataagcatataaaacacgtttatg 605
Query: 405 tttgcacttgcagaatatcaggtgcatttctgtgtgtgcatgtatgtgtggtgtttttac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tttgcacttgcagaatatcaggtgcatttctgtgtgtgcatgtatgtgtggtgtttttac 545
Query: 465 aataagcacagaggtatgcagtcttcttgaaaaattcttatgtgttagaaacatgcaaat 524
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 544 aataagcacagaggtatgcagtcttcttgaaaatttcttatgtgttagaaacatgcaaat 485
Query: 525 tgcagtcttgaagctctctctctctct 551
|||||||||||||||||||||||||||
Sbjct: 484 tgcagtcttgaagctctctctctctct 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
