Query= MSMg01no467_e20.b1 MSMg01no467_e20.b1 CHROMAT_FILE:
MSMg01no467_e20.b1 PHD_FILE: MSMg01no467_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:07 2005
(512 letters)
>mm_chr19_41177924_41178834
Length = 911
Score = 907 bits (469), Expect = 0.0
Identities = 502/513 (97%), Gaps = 3/513 (0%)
Strand = Plus / Plus
Query: 1 tagttcttcccttgaataaacacaggaacagaccgctaagccatacccttgaagaaattg 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagttcttccattgaataaacacaggaacagaccgctaagccatacccttgaagaaattg 260
Query: 61 gctgcaaagcccgctttattgatggagccgtcggacacaaacttcacccacagtcggtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgcaaagcccgctttattgatggagccgtcggacacaaacttcacccacagtcggtta 320
Query: 121 gcgctggatttcacggcctccggcttctcatagccacagaagtggccaatcagggtgctg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gcgctggatttcacggcctccggcttctcgtagccacagaagtggccaatcagggtgctg 380
Query: 181 tcctctgtgggaccgtctcggatttccagatagtcatatgcacaactgtcatgcctttcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctctgtgggaccgtctcggatttccagatagtcatatgcacaactgtcatgcctttcg 440
Query: 241 atctatatataaagacaggggccacgt-gggtgacactggctggcttggcttcaaggatt 299
||||| | | |||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 441 atctaaagagaaagacgggggccacgttggg-gacactggctggcttggcttcaaggatt 499
Query: 300 tttaactcagaatcaaaaacctaaccatctccctcaaatctaagcaggctgagttcatac 359
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 tttaactcagaatcaaaa-cctaaccatctccctcaaatctaagcaggttgagttcatac 558
Query: 360 ccagcttgtccagtctgtctctgttgcaaaagtcaagatgaatcaggctgaggaggctct 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 559 ccagcttgtccagtctgtctctgttgtaaaagtcaagatgaatcaggctgaggaggctct 618
Query: 420 aagagaaacaaggaagatgggcttgaaatggacttttggcttcctgttcttaaccaaaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagagaaacaaggaagatgggcttgaaatggacttttggcttcctgttcttaaccaaaag 678
Query: 480 tggaaagtcatctctttgtgtgtgtgtgtgtgt 512
|||||||||||||||||||||||||||||||||
Sbjct: 679 tggaaagtcatctctttgtgtgtgtgtgtgtgt 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_e20.g1 MSMg01no467_e20.g1 CHROMAT_FILE:
MSMg01no467_e20.g1 PHD_FILE: MSMg01no467_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:07 2005
(398 letters)
>mm_chr19_41336908_41337700
Length = 793
Score = 712 bits (368), Expect = 0.0
Identities = 389/398 (97%), Gaps = 5/398 (1%)
Strand = Plus / Minus
Query: 1 acttatttatttttttaattcagaatggtagacgcggggaagtgtggaaagtctgataaa 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 acttatttattttttt-attcagaatggtagacgcggggaagtgtggaaagtctgataaa 535
Query: 61 cctagaagattgcttggcgaattggagattgtttcaaggtttttatctgtattatgattt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 534 cctagaagattgcttggcaaattggagattgtttcaaggtttttatctgtattgtgattt 475
Query: 121 ttttttttttgcccgagtagttgtgtatttactaaatttaaaatatgtggagaacgtttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttttttttttgcccgagtagttgtgtatttactaaatttaaaatatgtggagaacgtttg 415
Query: 181 gctgtagctgatcggtgacaaaatgggagtacgctgcttttaaggggcagacgttagatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gctgtagctgatcggtgacaaaatgggagtacgctgcttttaaggggcagacgttagatt 355
Query: 241 ttgtttgtagtgaacaaaactttgttttgattagccaattaaaaactctaaactaggctg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 354 ttgtttgtagtgaacaaaactttgttttgattagccaattaaaaactctaaattaggctg 295
Query: 301 ttgtattttcagtcactgccagaatctaattgcatgtgtatgcgagtttttttttttttc 360
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 294 ttgtattttcagtcactgctagaatctaattgcatgtgtatgcgag----tttttttttc 239
Query: 361 cagagaaacgttgaatcagtaactttttttctgcgaca 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cagagaaacgttgaatcagtaactttttttctgcgaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 793
Length adjustment: 9
Effective length of query: 389
Effective length of database: 784
Effective search space: 304976
Effective search space used: 304976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
