BAC Information

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BAC

Clone NameMSMg01-468C07
Chromosome19 (Build37)
Map Location 34,342,281 - 34,342,610
singlet/doubletsinglet
Overlap genenone
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2
Downstream geneFas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468C07.T7 (MSMg01no468_c07.b1)MSMg01-468C07.TJ (MSMg01no468_c07.g1)
ACCAG551684AG551685
length914856
length of high quality
(start - end)
---330 (78 - 407)
definitionCHROMAT_FILE: MSMg01no468_c07.b1 PHD_FILE: MSMg01no468_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:14 2005CHROMAT_FILE: MSMg01no468_c07.g1 PHD_FILE: MSMg01no468_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTCANTACTCCGCGGAA
TTCTTTGACTGATGCCTGCACCTGTATAGCCAGAAAAGGCAGAATGTATT
ATGTGTTATATGTATATGTGTGCCCCCATATATATACACAACGTGTCGCC
CACTTCACCTCCTCCCCTACCTCCCCCCCTCCTCTTCTCCCCTCCTTCTT
CTCCTTTCTATTCACCTTCCCCCTCTATTCCTCATTCCATCCCACTTCCT
TATTCCCTTTTTTTTTTTCTTTTTTCTCTAATACCCCTTTTTTTCGTATA
TTTCTTCTCATCTCTCCCCACACTTTTTTTTTTTTTCCACCCACACTTTC
TTTCCCTCTTTTTTAAATTTTTTTTTCTCCCCCCCCCTTCTATTTTACAC
ACTTCCTCTCTCTATCCTCTTCTTTTTCCATTCCTCCCCTTATTCTTTCT
TCTCTCTCTTTTTTTTTCCTCCTTTTTTTCTCCCCTCCCCTTCTTTTCTC
TTTCCCCCCCCTTCTTCATTTTCCCCCTTCTTTTCTCTTTCCTTTTTTCA
TTTTCTTCTTTTCCCCCCTTACTTACCTCCTTCCCCTTTCTCCCTTTTTT
TTTCCTTCTTCTCTCTTTCCCTTACTCACCTTTTCCTCCTCCTCCTCCTT
CTTCCCCTCCTCCTTCTCTTTTTTTTCTCTTTCTCCCCCCTATTTTTCCT
ATACCCCCCTTTTTCCTCTCTTCTCTCTCCTTTCTACCCCCTCTCCCCTC
TTCCCTCCCCCTACTCCTTCCTCCTCCCTCCCCCATTTTCCTTTTCCTAT
TCTTATTCCTCCCCACTCCCTCTTCCTTCTTTCTCCACTTCCCTCCCCTT
TATCCCCCCCCCTTCTCACTCCTCCCTTTTTCTCTTTCTTCATTTCCCCC
ACCCCCACCCGCTG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGTTATGCTGACTAATTTCT
GGACTTTCCCAATGCAACGTTGATATTCTGGTCTCTCCCATTCCCTAGCA
CTAATATGAATTGTGCTAAACTAGACAAAGAATTATTGATTGGTCCCAGC
ACTTCTCAACATGTGCTCTCTCAACTGCTGTGCATTAGCATCATCAAGCT
TAGATGCAAATGAACCTGGAAGTCAGGAGAAGGCTGAGGACTTGCTGCAC
TCGAAGAGAGTCAATAAAAGGAAAAGTTATTTTTTCTTGGCTCTGTCAGA
TTTCCTAGGCCTTTCCTGTGGACAGAAGAGGAAGCTGACCTTAGGGGGAG
ATTTCTTTAGAGAGACCAAGCTATCCTTTCTTAGCTAGTACTTTGCTCTT
CTTTTAAGAATGAATATTGTAGGTACTTTGATGAACTTACCTTCTATTGC
ATTTTTTCCATATCTATTCTTCGTCTTTTTTCTCTTTCTCTAATTCTCGT
TTCCTGTCCTTTATTCTCTTTTTTTTTTTTCTATTCCTTTATTAATTATT
TTACCTATTTCATTTTTATCTTTCTTTATTTCTATCTTTCCTTATTTCTT
TTTCTCTATTTTCACTATTACCTACTATCTTTTCCAACTTCTATTCTCTT
TCCTTCATTCTTTACTTTTCTCGTTTCGCGTTACTTCTCCTTCCCCTTCT
TCTCCCTTCTTCTTTTTACCTTATTCTCTCTCTCCTATTCTTATCTATAC
ATCTTATTTCCACGTACATATTTCTTATCTCCTATTTCTAAATAACATTT
ATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_c07.g1 MSMg01no468_c07.g1 CHROMAT_FILE:
MSMg01no468_c07.g1 PHD_FILE: MSMg01no468_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:14 2005
         (330 letters)



>mm_chr19_34342081_34342810
          Length = 730

 Score =  588 bits (304), Expect = e-172
 Identities = 323/336 (96%), Gaps = 12/336 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagttatgctgactaatttctggactttcccaatgcaacgttgatattctggtctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cagagttatgctgactaatttctggactttcccaatgcaacgttgatattctggtctctc 471

                                                                       
Query: 61  ccattccctagcactaatatgaattgtgctaaactagacaaagaattattgattggtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccattccctagcactaatatgaattgtgctaaactagacaaagaattattgattggtccc 411

                                                                       
Query: 121 agcacttctcaacatgtgctctctcaactgctgtgcattagcatcatcaagcttagatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agcacttctcaacatgtgctctctcaactgctgtgcattagcatcatcaagcttagatgc 351

                                                                       
Query: 181 aaatgaacctggaagtcaggagaaggctgaggacttgctgcactcgaagagagtcaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaatgaacctggaagtcaggagaaggctgaggacttgctgcactcgaagagagtcaataa 291

                                                                       
Query: 241 aaggaaaagtt------attttttcttggctctgtcagatttcctaggcctttcctgtgg 294
           |||||||||||      |      ||||||||||||||||||||||||||||||||| ||
Sbjct: 290 aaggaaaagttaggaaaa------cttggctctgtcagatttcctaggcctttcctgggg 237

                                               
Query: 295 acagaagaggaagctgaccttagggggagatttctt 330
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 acagaagaggaagctgaccttagggggagatttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)