Query= MSMg01no470_f06.b1 MSMg01no470_f06.b1 CHROMAT_FILE:
MSMg01no470_f06.b1 PHD_FILE: MSMg01no470_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:12 2005
(249 letters)
>mm_chr19_18712795_18713443
Length = 649
Score = 410 bits (212), Expect = e-119
Identities = 245/268 (91%), Gaps = 19/268 (7%)
Strand = Plus / Minus
Query: 1 cattgtgaagttgaaagagattatatcaccttcactaaattctagcaggatatcagcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cattgtgaagttgaaagagattatatcaccttcactaaattctagcaggatatcagcagc 279
Query: 61 ttcttttattgtacgtaataaactacagttgtgacagtgcttggatttggacatccacaa 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttcttttattgtacgtaatagactacagttgtgacagtgcttggatttggacatccacaa 219
Query: 121 gaaccgcacgctgagct-------------------atcaccagtgcttgttattgtttc 161
||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 218 gaaccgcacgctgagctagaagtgggccgatgaagcatcaccagtgctcgttattgtttc 159
Query: 162 aaacttacatatgttgtttattactctgcaatgatctattacaagctcacagatttgctt 221
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 158 aaacttacatatgttgtttattactctgcaatgatctatcacaagctcacagatttgctt 99
Query: 222 gtagaggctttatggccgcatactaata 249
|||||||||||||||||| |||||||||
Sbjct: 98 gtagaggctttatggccgtatactaata 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no470_f06.g1 MSMg01no470_f06.g1 CHROMAT_FILE:
MSMg01no470_f06.g1 PHD_FILE: MSMg01no470_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:12 2005
(431 letters)
>mm_chr19_18554756_18555586
Length = 831
Score = 801 bits (414), Expect = 0.0
Identities = 426/430 (99%)
Strand = Plus / Plus
Query: 1 atcttaccatcaacattctggcatcgtctcagccttgaccctaagaagcttctgcttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttaccatcaacattctggcatcgtctcagccttgaccctaagaagcttctgcttgtg 260
Query: 61 gctggtattgatgacagctatacttaggccagagccttagtacctaccaccctgggcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctggtattgatgacagctatacttaggccagagccttagtacctaccaccctgggcaac 320
Query: 121 ttttctgaggctatctttgatgtcatcttcaagacctacagctacctcattcacaatctt 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctgagactatctttgatgtcatcttcaagacctacagctacctcattcacaatctt 380
Query: 181 tggaaagagcctccattaaccaagttttcctaccaagaattaaccgaccatttgtagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaaagagcctccattaaccaagttttcctaccaagaattaaccgaccatttgtagaac 440
Query: 241 ctagaacaggatcgctgtgcaagctccatatgtagctaccacagtatggttttatataag 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagaacaggattgctgtgcaagctccatatgtagctaccacagtatggttttatataag 500
Query: 301 aaaaataaagtgaattaagccttttttaaaaggcaatctttacaggattgtcactcattg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaataaagtgaattaagccttttttaaaaggcaatctttacaggattgtcactcatta 560
Query: 361 ttttaaataaatatttgaacacattaaatatctgccaacgcaggattgatttatttaacc 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 ttttaaataaatatttgaacacattaaatatctgccaacgcagaattgatttatttaacc 620
Query: 421 aggactgaac 430
||||||||||
Sbjct: 621 aggactgaac 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
