Query= MSMg01no470_l13.b1 MSMg01no470_l13.b1 CHROMAT_FILE:
MSMg01no470_l13.b1 PHD_FILE: MSMg01no470_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:43 2005
(330 letters)
>mm_chr19_18391735_18392466
Length = 732
Score = 516 bits (267), Expect = e-151
Identities = 315/333 (94%), Gaps = 4/333 (1%)
Strand = Plus / Plus
Query: 1 tgttcatagtacacaaaagaccttagatttagctgcaaaaaatcactgtgtctcatgaat 60
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tgttcattgtacacaaaagaccttagatttagctgcaaaaa-tcactgtgtctcatgaat 259
Query: 61 tttcatttcctaggatttataaaggaccatatagacggatgagcatacttgaatctatgg 120
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttcatttcctaggaattagaaaggaccatatagacggatgagcatacttgaatctatga 319
Query: 121 tcccccgcagctggcgccagtgngttccntttctgccactctccttctaagttattttac 180
||||||||||||||| |||||| || || |||||||||| ||||||||||||||||||||
Sbjct: 320 tcccccgcagctggcaccagtgtgtaccttttctgccacactccttctaagttattttac 379
Query: 181 ttctatttacatcattgcttctttaactacactt---tgtatgcctttccaaagcacctt 237
||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 380 ttctaaacacatcattgcttctttaactacacttctttgtatgcctttccaaaacacctt 439
Query: 238 tggatatatttctcatttggcaccccaatccttcctcttttaaaattattattttaataa 297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 440 tggatatatttctcatttggcaccccaatccttccccttttaaaattattattttaataa 499
Query: 298 acattgaatctctccactttggaatgaaggcat 330
|||||||||||||||||||||||||||||||||
Sbjct: 500 acattgaatctctccactttggaatgaaggcat 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 732
Length adjustment: 9
Effective length of query: 321
Effective length of database: 723
Effective search space: 232083
Effective search space used: 232083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no470_l13.g1 MSMg01no470_l13.g1 CHROMAT_FILE:
MSMg01no470_l13.g1 PHD_FILE: MSMg01no470_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:43 2005
(510 letters)
>mm_chr19_18554238_18555147
Length = 910
Score = 905 bits (468), Expect = 0.0
Identities = 498/508 (98%)
Strand = Plus / Minus
Query: 3 aatgcagtgcctctgtgtccttcactttgcatgtgatgctgttggactggctgattttgt 62
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 710 aatgcagtgcctctgtgtccttcactttgcctgtgacgctgttggactggctgattttgt 651
Query: 63 ttctctagtaatctccctgcaaagaccaatggaaagcttggcaataatgaaggcactcag 122
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttccctagtaatctccctgcaaagaccaatggaaagcttggcaataatgaaggcactcag 591
Query: 123 atggtggtgactacctccctggagaactggacaccttcaccaacatcacttttatagtct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atggtggtgactacctccctggagaactggacaccttcaccaacatcacttttatagtct 531
Query: 183 ccaggggtgacaaacacctcagatctgtctgctggctcactgggacaggtctttttgtac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ccaggggtgacaaacacctcagatctgtctgctggctcactgggacaggtctttttgtac 471
Query: 243 cctgtcttgagctaggaatctgcctccttgaggaatgaccaaggaaacaatcagcatctc 302
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 cctggcttgagctaggaatctgcctccttgaggaatgaccaaggaaacaatcagcatctc 411
Query: 303 agacttccttgatgagcagggtgaacaagcacctctccagggacttcctgtgtttgagta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agacttccttgatgagcagggtgaacaagcacctctccagggacttcctgtgtttgagta 351
Query: 363 ggggatccagcctggtgatgggatgaactccctctctttggccttggccttgatgctcat 422
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 350 ggggatccagcctggtgatgggatgcactccctctctttggccttggccttgatgctcat 291
Query: 423 ctgctgagagcctcatccaaagatgattgttcctgacagcgaggatcaacaccacccaaa 482
||||||||| |||||||||||||||||||||||||| || |||||||||||| ||| |||
Sbjct: 290 ctgctgagaacctcatccaaagatgattgttcctgaaagggaggatcaacactacctaaa 231
Query: 483 caacaaattcttagcacaaagggttggg 510
||||||||||||||||||||||||||||
Sbjct: 230 caacaaattcttagcacaaagggttggg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
