BAC Information

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BAC

Clone NameMSMg01-470L18
Chromosome19 (Build37)
Map Location 17,609,401 - 17,757,828
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneGna14, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470L18.T7 (MSMg01no470_l18.b1)MSMg01-470L18.TJ (MSMg01no470_l18.g1)
ACCAG553667AG553668
length757753
length of high quality
(start - end)
248 (73 - 320)463 (76 - 538)
definitionCHROMAT_FILE: MSMg01no470_l18.b1 PHD_FILE: MSMg01no470_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:44 2005CHROMAT_FILE: MSMg01no470_l18.g1 PHD_FILE: MSMg01no470_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,757,581 - 17,757,828)(17,609,401 - 17,609,863)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGCATCCGCGG
AATTCTGCAGAATATCTCTAAGGTATTTCTAAGAAAAGTCTACATAGTGA
CTAGAAGCAGATTGTCTAAACCAATGACGTACTGCCTGAAGAAGTAGCCA
GTGGGAGACAGTGGGCTGACATCTGAAAGGTGGTGGTGGTGAAGAATTCT
TGAATGTGTGTAATTGTCTTCATGAACAAGTTACGTCATTCTTCTGAAAC
CAACTAACAACTCTGAGCTAGACCTCAAAGAATGCTGAAAGAGAGTACAC
ACTACAAACAGAAACAGAGCTTTTATTATACCTGTAACTGTAAACATACA
TATTCAGAATAATGACAGTAATGGTTATTTATAGAGTAAAAAACAACAAA
AAAAAAAAAAACCTCAGAGTTATTCTGACTGTGTATAGCTTAGACATGAG
TATGACACACAGACAACCCAGGTCAAGACACTCTTAAAGTGTGTGTTGTT
TGCGAAAAGAAGACTATGCTGTTGACGACTTTACCCATCTGTTCATACGG
ACCACCATGTGCTACAAGAACATTCTGATAAGTGGTACCCTCCCTGTACT
TGTCTACCCCCATGACCACTTACCCTGCTTGGCCTTCTCTTTTCTTGAAC
CAAATCTTCGTTTTTTTTTCCCCACCACCCTTTGTTTACCATTCTTGGCG
ACGCCTCTGGCATATCACTCAGGACCCCCCCCTCCGTCCCCCGTATTCTC
CCCCAAT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGCCCAGTCCCACCCTTGTGGCC
CAGCCCAGCTCTCGCAGTCGACAACTTAGCCTTTAACTGGGTCGCTATCA
GCATCACCACAGGCATGGGCGCTGTTCTACAGCTTATCTAGTGACAGATT
TGTGAGGAGCCTGGAACCTCAGATGGTGACTAAGGAAACATGTCCATGCC
ATTTGTCAGGTTGCCATGTGTTCCACTGGGAGTGACCATGCTGTGCTCTT
CCAAACAGTCCAAGAGTGTAAATAGAAAACTAAAGATCAGTCAGTGTTGT
GTGTCAGCAGAACAGGAGGCTTTGTGCTCTGCAAATGAGGAAAGCCTGCA
GTTGCCCGACCTGGGCTTGGTCTCTCAGTCTCTTCTCCAGCTGTCCCAAA
TTAACCAAACACATATTTTCCTGACATTCCTCTTCTGTGAAATGTGGAGA
ATAACCTCTCATGGCATGTGGTGGGGATCAAGTGGGCAATCAGACCTCAT
ACACCTTGCACAGTGGATGGCCAAATGCTATGGTTACCAGAAACTTTAAT
TGCATCACACTGTCACATCTTTACATTTCTGTTAACCATGCGCTTAGTGT
CTCTCTAAGCTTTCTTTTGCCAGAATTAAGAATTCAGTCCTCCAAATTGA
ACTTTCGAAATATTCTTCAAACCCTGTCAGAATTGGACTCCAAATTATTG
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_l18.b1 MSMg01no470_l18.b1 CHROMAT_FILE:
MSMg01no470_l18.b1 PHD_FILE: MSMg01no470_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:44 2005
         (248 letters)



>mm_chr19_17757381_17758028
          Length = 648

 Score =  410 bits (212), Expect = e-119
 Identities = 239/248 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatttctaagaaaagtctacatagtgactagaagcagattgtctaaaccaatgacgtac 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtatttctaagaaaagtctgcatagtgactagaagcagattgtctaaaccaatgacgtac 389

                                                                       
Query: 61  tgcctgaagaagtagccagtgggagacagtgggctgacatctgaaaggtggtggtggtga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 388 tgcctgaagaagtagccagtgggagacagtgggctgacatctgaaaggtggtggtggtca 329

                                                                       
Query: 121 agaattcttgaatgtgtgtaattgtcttcatgaacaagttacgtcattcttctgaaacca 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 328 agaattcttgaatgtgtgtaattgtcttcatgaacaagttacatcattcttctgaaacca 269

                                                                       
Query: 181 actaacaactctgagctagacctcaaagaatgctgaaagagagtacacactacaaacaga 240
           || || ||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 268 acaaaaaactctgaggtagacctcaaagaatgctgtaagagagtacacactacaaacgga 209

                   
Query: 241 aacagagc 248
           || |||||
Sbjct: 208 aatagagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no470_l18.g1 MSMg01no470_l18.g1 CHROMAT_FILE:
MSMg01no470_l18.g1 PHD_FILE: MSMg01no470_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:44 2005
         (463 letters)



>mm_chr19_17609201_17610063
          Length = 863

 Score =  857 bits (443), Expect = 0.0
 Identities = 458/463 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcccagtcccacccttgtggcccagcccagctctcgcagtcgacaacttagccttta 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 catgcccagtcccacccttgtggcccagcccagctctggcagtcgacaacttagccttta 260

                                                                       
Query: 61  actgggtcgctatcagcatcaccacaggcatgggcgctgttctacagcttatctagtgac 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgggtagctatcagcatcaccacaggcatgggcgctgttctacagcttatctagtgac 320

                                                                       
Query: 121 agatttgtgaggagcctggaacctcagatggtgactaaggaaacatgtccatgccatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatttgtgaggagcctggaacctcagatggtgactaaggaaacatgtccatgccatttg 380

                                                                       
Query: 181 tcaggttgccatgtgttccactgggagtgaccatgctgtgctcttccaaacagtccaaga 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaggttaccatgtgttccactgggagtgaccatgctgtgctcttccaaacagtccaaga 440

                                                                       
Query: 241 gtgtaaatagaaaactaaagatcagtcagtgttgtgtgtcagcagaacaggaggctttgt 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtaaatagaaaactaaagaccagtcagtgttgtgtgtcagcagaacaggaggctttgt 500

                                                                       
Query: 301 gctctgcaaatgaggaaagcctgcagttgcccgacctgggcttggtctctcagtctcttc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gctctgcaaatgaggaaagcctgcagtcgcccgacctgggcttggtctctcagtctcttc 560

                                                                       
Query: 361 tccagctgtcccaaattaaccaaacacatattttcctgacattcctcttctgtgaaatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccagctgtcccaaattaaccaaacacatattttcctgacattcctcttctgtgaaatgt 620

                                                      
Query: 421 ggagaataacctctcatggcatgtggtggggatcaagtgggca 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagaataacctctcatggcatgtggtggggatcaagtgggca 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)