Query= MSMg01no470_n24.b1 MSMg01no470_n24.b1 CHROMAT_FILE:
MSMg01no470_n24.b1 PHD_FILE: MSMg01no470_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:56 2005
(277 letters)
>mm_chr19_17130325_17131001
Length = 677
Score = 453 bits (234), Expect = e-132
Identities = 264/274 (96%)
Strand = Plus / Plus
Query: 4 gaattcctcatcctttcagagctatcagtcatccaccctcagcagcccagtgtgcaggct 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctcatccacacagagctatcagtcatccaccctcagcagcccagtgtgcaggct 263
Query: 64 ccacacagagcccctgggcttctcatttgcattactgagctggggatcccgcaagtataa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccacacagagcccctgggcttctcatttgcattactgagctggggatcccgcaagtataa 323
Query: 124 taagggaacagaagcaggtccaggaggaggagtcatagaagagaatgaggtttgatgtga 183
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 324 taagggaacagaagcaggtccaggaggaggagacatagaggagaatgaggtttgatgtga 383
Query: 184 acatttagagttttaaacatcgaaagttaacccaaggcaacctaactgattggcatcggc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 acatttagagttttaaacatcgaaagttaacccaaggcaacctaactgattggcataggc 443
Query: 244 cgtggaagttcctaagtgattacctaggtactca 277
|||| |||||||||||||| ||||||| |||||
Sbjct: 444 tgtgggagttcctaagtgatcacctaggcactca 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no470_n24.g1 MSMg01no470_n24.g1 CHROMAT_FILE:
MSMg01no470_n24.g1 PHD_FILE: MSMg01no470_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:56 2005
(412 letters)
>mm_chr19_17291816_17292623
Length = 808
Score = 659 bits (341), Expect = 0.0
Identities = 393/419 (93%), Gaps = 18/419 (4%)
Strand = Plus / Minus
Query: 1 ttgcccactctagttccttggatctcctcctgctgcttagagagatgatatgcctggtag 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 608 ttgcccactctagttccttggatctcttcctgctgcttagagagatgatatgcctggtag 549
Query: 61 gtgctcaggaaagacagggatgaaaagggaaacttgtaggggatatatatgttctcctaa 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 548 gtgctcaggaaagacagggatgaaaagggaaacttgtagggg----atatgttctcctaa 493
Query: 121 gaatgggaaataacatcagcagttggcagctccctccctcccacccagctctgcaaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaatgggaaataacatcagcagttggcagctccctccctcccacccagctctgcaaggag 433
Query: 181 cccacacaggaatagatgcatcaccctgtacaccaacccgaaatccctctcaccaatagg 240
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 432 cccacacaggaatagatgcatcaccctgtacaccaacccaaaatccctctcaccaataga 373
Query: 241 ga----acaaacata---ttttttaggcagaggagtgggtaagccccaagatatagcatc 293
|| ||||||| | |||||||||||||||||||||||||||| ||||| |
Sbjct: 372 gaacagacaaaca-aggc------aggcagaggagtgggtaagccccaagatgtagcagc 320
Query: 294 aacaggccaatgaggagcaagctgaactgtgagtgctgtttgtgttcaaggggcattgct 353
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 319 aacaggccaatgaggagaaagctgaactgtgagtgttgtttgtgttcaaggggcattgct 260
Query: 354 tctcaatgggaaggaacgccctgtatttgaaagatagattatggtaggatgaggggctg 412
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 259 tctcaatgggaaggaacgccctgtatttgaaagatagattatggtagaatgaggggctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 808
Length adjustment: 9
Effective length of query: 403
Effective length of database: 799
Effective search space: 321997
Effective search space used: 321997
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
