BAC Information

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BAC

Clone NameMSMg01-471I17
Chromosome19 (Build37)
Map Location 18,468,131 - 18,468,333
singlet/doubletsinglet
Overlap genenone
Upstream geneRfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471I17.T7 (MSMg01no471_i17.b1)MSMg01-471I17.TJ (MSMg01no471_i17.g1)
ACCAG554287AG554288
length752756
length of high quality
(start - end)		562 (46 - 607)502 (77 - 578)
definitionCHROMAT_FILE: MSMg01no471_i17.b1 PHD_FILE: MSMg01no471_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:49 2005CHROMAT_FILE: MSMg01no471_i17.g1 PHD_FILE: MSMg01no471_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCTTCTCTGAGCCCCATTTTTAATGGCGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCCTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTAATC
CATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTGTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTATGTCAGGCATGGTGATTCCACCGGAAGGTCCTTTT
ATCCTTTGAAAGAGTTTTTGCTATCCTAGGGTGTCGGGCGACTTCCCTTG
GA

NCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGCGACACACTATTGGTTT
ATTTAAACATCAGCAGAAAAATTACATGTATGTGCAGGGTGTCAGAGTTC
TGTGGGTTGTTCACTCAGTTCAGATAGTCCTGTTATGTCCTCACATTCCT
CTTTATCTTTAAGGTTAAGCTGTTCCCAGTAATGTTTTAACTACGGGGCA
TACCCAGATTTGTTTTTCTCTTTATTCTCAGCCCCAGGCAGCCTCTAGCT
CACAAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTGA
AATTTCATCTTTCTTTCAAAAGCATATTTGGTGAACATTTTAGATGAAAA
GATGAAACCATGTTCTTATGACCCAGAGTATCTGGAACTTTCAGACCATA
TATAAAACCCACTTGTTAGGAAATCTAGTCTCAAAACCATCAGAAAATAT
TAACACATAGTAAACTGAAGAAGGGGAAAGAGAAGAGAATGCAACAAAGA
ATGGATATGTTTGTTTAGTTAAATGTAATCAGCTTAATATGGGAGAAACA
CAGATTCAGCCAAAATACACGAGGGAGCCNCNNTAATATAATAAAAATGA
ATTTCCCTTAATAACTGCTGTATGAAAGGGGTGGTCAAACACATAATTTA
TATTATTGAATCTTCTAAAACCAACATTCTTAGGAGGTTTCAGACATAAA
CTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_i17.g1 MSMg01no471_i17.g1 CHROMAT_FILE:
MSMg01no471_i17.g1 PHD_FILE: MSMg01no471_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:49 2005
         (502 letters)



>mm_chr19_18467639_18468533
          Length = 895

 Score =  313 bits (162), Expect = 1e-89
 Identities = 196/210 (93%), Gaps = 7/210 (3%)
 Strand = Plus / Minus

                                                                       
Query: 293 aaagcatatttggtgaacattttagatgaaaagatgaaaccatgttcttatgacccagag 352
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aaagcatatttggggagcattttagatgaaaagatgaaaccatgttcttatgacccagag 636

                                                                       
Query: 353 tatctggaactttcagaccatatataaaacccacttgttaggaaatctagtctcaaaacc 412
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 635 tatctggaactttcagaccagatataaaacccacttgttaggaaatctagtctcaaagcc 576

                                                                       
Query: 413 atcagaaaatattaacacatagtaaactgaagaaggggaaagagaagagaatgcaacaaa 472
            ||||||||||||||||  |||||||||||||||||  | |   ||||||||||||||||
Sbjct: 575 ttcagaaaatattaaca--tagtaaactgaagaagg--aca---aagagaatgcaacaaa 523

                                         
Query: 473 gaatggatatgtttgtttagttaaatgtaa 502
           |||||||||| |||||||||||||||||||
Sbjct: 522 gaatggatatatttgtttagttaaatgtaa 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 895
Length adjustment: 10
Effective length of query: 492
Effective length of database: 885
Effective search space:   435420
Effective search space used:   435420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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