MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-471P08
Chromosome	19 (Build37)
Map Location	57,873,857 - 57,874,328
singlet/doublet	singlet
Overlap gene	Atrnl1
Upstream gene	A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038
Downstream gene	Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a
Link	Open Mouse BAC browser

Click to get alignment info.

name	A630007B06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213993 MGI:2445022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700010L13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75628 MGI:1922878
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Tdrd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83561 MGI:1933218
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	Vwa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240675 MGI:2684334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Afap1l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226250 MGI:2147658
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ablim1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226251 MGI:1194500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668259 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668259 MGI:3644656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	AI450540 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226252 MGI:2147545
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trub1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72133 MGI:1919383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100043038 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043038
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Atrnl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226255 MGI:2147749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gfra1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14585 MGI:1100842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043503 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043503
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins pseudo : _no_value

name	1700011F14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75645 MGI:1922895
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pnlip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69060 MGI:97722
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pnliprp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18946 MGI:97723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pnliprp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18947 MGI:1336202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700019N19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67507 MGI:1914757
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hspa12a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73442 MGI:1920692
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A630007B06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:25072200 GeneID:213993 MGI:2445022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A630007B06 gene transcript_id : NM_170757.1

name	1700010L13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270523 GeneID:75628 MGI:1922878
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700010L13 gene transcript_id : XM_001479353.1

name	Tdrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50355695 GeneID:83561 MGI:1933218
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tudor domain containing 1 transcript_id : NM_001002238.1

name	Tdrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50355699 GeneID:83561 MGI:1933218
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tudor domain containing 1 transcript_id : NM_001002240.1

name	Tdrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50355697 GeneID:83561 MGI:1933218
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tudor domain containing 1 transcript_id : NM_001002241.1

name	Tdrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24475714 GeneID:83561 MGI:1933218
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tudor domain containing 1 transcript_id : NM_031387.2

name	Vwa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42741660 GeneID:240675 MGI:2684334
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : von Willebrand factor A domain containing 2 transcript_id : NM_172840.2

name	Afap1l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122606 GeneID:226250 MGI:2147658
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin filament associated protein 1-like 2 transcript_id : NM_146102.1

name	Ablim1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38016177 GeneID:226251 MGI:1194500
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin-binding LIM protein 1 transcript_id : NM_178688.2

name	EG668259 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94405995 GeneID:668259 MGI:3644656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG668259 transcript_id : XM_001004102.1

name	AI450540 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380140 GeneID:226252 MGI:2147545
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI450540 transcript_id : NM_145505.3

name	Trub1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27754011 GeneID:72133 MGI:1919383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TruB pseudouridine (psi) synthase homolog 1 (E. coli) transcript_id : NM_028115.2

name	Trub1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353903 GeneID:72133 MGI:1919383
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TruB pseudouridine (psi) synthase homolog 1 (E. coli) transcript_id : NM_029839.2

name	LOC100043038 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270527 GeneID:100043038
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to Sm protein G transcript_id : XM_001479390.1

name	Atrnl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56699441 GeneID:226255 MGI:2147749
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : attractin like 1 transcript_id : NM_181415.3

name	Gfra1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328183 GeneID:14585 MGI:1100842
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glial cell line derived neurotrophic factor family receptor alpha 1 transcript_id : NM_010279.2

name	1700011F14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114205447 GeneID:75645 MGI:1922895
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700011F14 gene transcript_id : NM_029372.2

name	Pnlip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476138 GeneID:69060 MGI:97722
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pancreatic lipase transcript_id : NM_026925.3

name	Pnliprp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803252 GeneID:18946 MGI:97723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pancreatic lipase related protein 1 transcript_id : NM_018874.2

name	Pnliprp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755117 GeneID:18947 MGI:1336202
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pancreatic lipase-related protein 2 transcript_id : NM_011128.1

name	1700019N19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372226 GeneID:67507 MGI:1914757
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700019N19 gene transcript_id : NM_026208.2

name	Hspa12a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388274 GeneID:73442 MGI:1920692
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 12A transcript_id : NM_175199.3

name	A630007B06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:25072201 CCDS:CCDS29921.1 GeneID:213993 MGI:2445022
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : oocyte-testis gene 1 protein_id : NP_739563.1

name	1700010L13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270524 GeneID:75628 MGI:1922878
definition	codon_start : 1 product : hypothetical protein LOC75628 protein_id : XP_001479403.1

name	Tdrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50355696 CCDS:CCDS29922.1 GeneID:83561 MGI:1933218
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0018994 - polar granule [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : tudor domain containing 1 isoform 1 protein_id : NP_001002238.1

name	Tdrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50355700 CCDS:CCDS29922.1 GeneID:83561 MGI:1933218
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0018994 - polar granule [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : tudor domain containing 1 isoform 2 protein_id : NP_001002240.1

name	Tdrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50355698 CCDS:CCDS29922.1 GeneID:83561 MGI:1933218
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0018994 - polar granule [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : tudor domain containing 1 isoform 3 protein_id : NP_001002241.1

name	Tdrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13878217 GeneID:83561 MGI:1933218
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0018994 - polar granule [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 4 is encoded by transcript variant 4 product : tudor domain containing 1 isoform 4 protein_id : NP_113564.1

name	Vwa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42741661 CCDS:CCDS29923.1 GeneID:240675 MGI:2684334
definition	GO_component : GO:0005576 - extracellular region [Evidence IDA] GO_function : GO:0042802 - identical protein binding [Evidence IDA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : VWA-like domains, matrilins and collagens product : von Willebrand factor A domain containing 2 protein_id : NP_766428.2

name	Afap1l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122607 CCDS:CCDS29924.1 GeneID:226250 MGI:2147658
definition	codon_start : 1 product : actin filament associated protein 1-like 2 protein_id : NP_666214.1

name	Ablim1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38016178 GeneID:226251 MGI:1194500
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IDA]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : actin-binding double zinc finger protein product : actin-binding LIM protein 1 protein_id : NP_848803.2

name	EG668259 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94405996 GeneID:668259 MGI:3644656
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001004102.1

name	AI450540 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542081 CCDS:CCDS29925.1 GeneID:226252 MGI:2147545
definition	GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC226252 protein_id : NP_663480.2

name	Trub1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312414 CCDS:CCDS29926.1 GeneID:72133 MGI:1919383
definition	GO_function : GO:0004730 - pseudouridylate synthase activity [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA]; GO:0008033 - tRNA processing [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : TruB pseudouridine (psi) synthase homolog 1 isoform 1 protein_id : NP_082391.1

name	Trub1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23943926 CCDS:CCDS29927.1 GeneID:72133 MGI:1919383
definition	GO_function : GO:0004730 - pseudouridylate synthase activity [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA]; GO:0008033 - tRNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2 product : TruB pseudouridine (psi) synthase homolog 1 isoform 2 protein_id : NP_084115.1

name	LOC100043038 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270528 GeneID:100043038
definition	codon_start : 1 product : similar to Sm protein G protein_id : XP_001479440.1

name	Atrnl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56699442 CCDS:CCDS29928.1 GeneID:226255 MGI:2147749
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IPI] codon_start : 1 exception : mismatches in translation note : attractin-like protein product : attractin-like 1 protein_id : NP_852080.2

name	Gfra1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753976 GeneID:14585 MGI:1100842
definition	GO_component : GO:0019898 - extrinsic to membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence TAS] GO_process : GO:0009653 - morphogenesis [Evidence TAS]; GO:0007399 - nervous system development [Evidence IMP]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence TAS] codon_start : 1 note : GDNFR-alpha; GFR alpha-1 product : glial cell line derived neurotrophic factor family receptor alpha 1 protein_id : NP_034409.1

name	1700011F14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037425 GeneID:75645 MGI:1922895
definition	codon_start : 1 product : hypothetical protein LOC75645 protein_id : NP_083648.1

name	Pnlip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37674236 CCDS:CCDS29930.1 GeneID:69060 MGI:97722
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004806 - triacylglycerol lipase activity [Evidence IEA] GO_process : GO:0030299 - cholesterol absorption [Evidence IMP]; GO:0016042 - lipid catabolism [Evidence IEA] codon_start : 1 product : pancreatic triglyceride lipase protein_id : NP_081201.2

name	Pnliprp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9256628 CCDS:CCDS29931.1 GeneID:18946 MGI:97723
definition	codon_start : 1 product : pancreatic lipase related protein 1 protein_id : NP_061362.1

name	Pnliprp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755118 GeneID:18947 MGI:1336202
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004806 - triacylglycerol lipase activity [Evidence IEA] GO_process : GO:0006968 - cellular defense response [Evidence IMP]; GO:0007586 - digestion [Evidence IMP]; GO:0016042 - lipid catabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : pancreatic lipase-related protein 2 protein_id : NP_035258.1

name	1700019N19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385716 GeneID:67507 MGI:1914757
definition	codon_start : 1 product : hypothetical protein LOC67507 protein_id : NP_080484.1

name	Hspa12a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28461135 GeneID:73442 MGI:1920692
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006457 - protein folding [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 note : heat shock 70kDa protein 12A product : heat shock protein 12A protein_id : NP_780408.1

name	LOC100043503 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270581 GeneID:100043503
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins product : similar to ribosomal protein L30 pseudo : _no_value transcript_id : XR_034811.1

clone name	MSMg01-371D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489P15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-338H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528E16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-502P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477P18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-469F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244H16
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-471P08.T7 (MSMg01no471_p08.b1)	MSMg01-471P08.TJ (MSMg01no471_p08.g1)
ACC	AG554604	AG554605
length	1,255	721
length of high quality (start - end)	---	572 (85 - 656)
definition	CHROMAT_FILE: MSMg01no471_p08.b1 PHD_FILE: MSMg01no471_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:24 2005	CHROMAT_FILE: MSMg01no471_p08.g1 PHD_FILE: MSMg01no471_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:24 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	GTCCCGGCTCCTTGTTGCTCCTCGGGGCGAGGGGGGATTTTTTATATTTA TAAGATGTGGATAGGGAGAGAGACTGTTATACGTTAACGATGAAGACCGG CCGACCTGACCACAAGACCGAGAGATCCCAGCCTACCCTGTTCTATCTTT TCCTTACCATCTATAACCCGCCCCGACTCCATGCCTCATGCCGCCGGTCG TCCTAACGGCCGATCGCTGCACCAGATAACGACGATAGCCAAACCTACCG TGTTACCGTGCTATATTCGACTCGGTGCCCTAAGCCACTTGGCTGGTTTA ATAGCACCGCAGCCGGCAGAGACACGTAAGCGCAAGCCGTTCCAGTACAG GCGGTTGAGCGCCGTGCGCGGCAACAGAAAGGAAGAGAAGGAGAACAGAA TATGTAGTGTAGTAATTCATCGCTACCGGGCGTCGCGGGCCATAGCAGAC GAGATGTGAGTGATGGGACGCTAATAAACGTAGCCGCAGCCGCGCGGGAT CGCCTGAGAGATAGCGCGCGGGAAGCTTGTGTTGTTCCGCGCATCTAAGC GCCGAGGGGTGGGAATGAGTAGAGATGGATCCGGCGCGACGATATATATA TGGTGACACGTTATATACCGCGCGTCGCGTTGTGGAGCCATCAAACCAGC ACAGGGCGAGGAGAATATCATACATAGATGGGCTTAACGATAGAGACGAG GAATGTGCGAGTGTTTCTGTAAGTAAATAATACATCAGATAACGCTTATC CCTCGCCGCGCGCAGGGGGCGATATACGCGTTGCGATTTGCACACCCCTG TGTATCATCGGGTGCTGGGGTCCTCGCGTAGTTCTGTTGATGCACGACGA AAACACTCGTCTGCGCGCACACCCACAGTCGGTGTGCCTATGAATGTAAT AGCCGCACGACTCTGTCGGGGGTGTTAGGATGCGGGATACCACGCCGATC GGCGGCGGGGACCGATGGTGGTGCGGAAGACCGTGTAAATACGAGCCAGA ACGCAGCGCTCGCGCCGCCATGCTATATCCCCCTTGGCGCGCGATGAAAA GAACACGAGTGGGTCGAAATAAATGGAAGGGGGGCAAAACATAGCCGTAA TTGGGGTATCGCTATTATCTGGATCCNGCCGCGCCGAGCAATTCGGCTGC GCCCCCCCTGTTGCGCAGTATAATTATGAGGCAAACGACGGGTCACGACC GCACAAGCCATATATCACGGCGGTTGTCGCGCGGTTACAGACGAGTCGCA TACCN	TAANTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTATCATCATAAGG GCATGTAATGACATTAAAAGCATTTGGAGATCAGAAAACAAAACTGGGGA ATTGCCTTCCCAGTGTTAGTAAAAACATCCCTGGCCAACATGTGTCCTTT GACTCTCTGGGCCTTAGGAAAACAAACCTGGAAAGAATTCCTCAATGAAA TAAAAATCCTCTAAACTGGTAATCTGATCAAGGTAACAAGCAACATCGTG TCTACTATGAACATCAAGATACAGATTGGTCTCACAGCCTTTAATGTCTT TCATTGTCCTGTGGAGGCTTGAGACCCCAGCGTAAAGGGATGCTACATTG GTGAAGCGGTAGGGGAGGGGGGCAGGGGAGCACCCTCACAGAGGAAAAGG GAAGGGGGGATGGGAGGGGGGACTTGCAGAGGGGAAACTAGAAAGGGGGA CAAAAATTGAAATGTAAATAAATAAAATAATCAATTAAAAAAAAAGAAAA GTATTTAGAAGCAACGAATTGAAGAAAAAAGCCTATTGGAAGCATGTGTA TAGCAGGGCACCTCACCCCTATAGATATGTCTGTTTAGGCAGCGGTGAAC AAATCCAATTGTGACAGAGAAGAGTACCTCCCTGTACTTTAGAGACAGAA GCTCACACTGAGAGAAGACCN
quality values	Open. Hide. 9 9 9 14 15 10 10 10 12 12 8 6 6 6 6 8 6 8 8 8 9 9 9 9 11 10 8 8 8 8 8 8 8 10 13 10 9 9 9 11 11 6 6 6 6 8 8 8 8 8 6 6 6 6 6 6 8 8 9 9 8 8 8 8 8 8 8 8 8 8 8 11 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 10 8 8 8 9 9 9 8 8 8 10 8 8 6 8 6 6 8 8 6 6 8 8 8 8 11 12 10 8 8 8 6 6 8 8 8 8 12 8 8 8 8 10 9 11 11 11 16 12 7 10 7 7 8 10 11 11 11 11 8 8 8 8 8 6 7 8 8 8 8 8 8 8 11 10 10 13 9 8 8 8 8 10 8 8 8 9 11 9 9 8 10 10 10 10 6 6 8 6 8 8 8 10 6 8 8 8 10 10 10 10 10 10 10 8 8 8 6 8 6 6 6 8 8 10 8 8 8 6 8 8 10 8 8 9 10 8 8 8 8 8 8 8 8 8 8 6 10 10 8 8 8 8 6 8 6 6 8 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 10 8 8 8 8 6 6 8 8 8 12 11 10 10 8 8 8 6 6 6 6 8 6 6 8 8 10 8 6 6 6 8 8 8 6 6 6 6 9 11 10 10 10 8 7 7 10 8 8 8 8 8 6 6 8 6 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 9 6 6 6 6 6 6 10 10 10 8 8 8 8 8 8 8 8 8 8 8 10 10 8 9 9 9 8 8 8 8 8 8 8 7 6 8 8 6 6 7 7 10 10 8 8 8 8 8 10 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 9 9 9 9 9 9 9 6 6 6 8 6 6 8 8 9 8 8 8 8 8 8 9 8 8 8 8 8 8 11 11 11 11 6 8 6 7 6 6 8 8 8 8 8 8 8 8 8 9 10 11 14 11 8 8 8 8 8 9 10 11 11 11 10 9 9 11 9 9 10 10 10 9 8 8 8 8 8 8 8 8 7 10 6 6 8 6 6 6 6 6 6 8 8 10 9 9 8 8 8 8 10 8 8 10 10 11 13 13 13 13 11 8 8 8 8 8 6 6 8 8 8 10 10 8 8 8 9 8 8 6 6 8 6 7 6 6 6 6 6 6 10 12 8 8 6 7 6 6 7 6 8 8 9 6 6 6 7 6 6 6 6 8 8 8 8 8 8 8 6 6 6 8 8 9 11 11 10 10 10 10 8 8 6 6 6 6 8 8 8 8 9 8 8 6 6 8 8 8 8 8 8 9 9 8 10 8 8 6 6 6 6 8 6 6 6 6 6 8 8 8 8 8 8 6 6 8 8 10 6 6 6 8 8 6 6 6 6 11 11 9 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 10 8 7 7 6 8 8 8 8 8 8 8 11 8 8 13 18 13 10 10 8 8 6 8 6 7 11 8 8 6 8 6 6 8 8 8 8 6 6 6 6 8 9 9 10 10 9 8 8 8 8 6 8 6 7 8 8 8 7 7 8 8 10 8 8 8 8 8 8 8 8 8 8 11 12 10 9 9 9 11 13 12 19 12 11 8 8 6 6 6 6 6 8 8 13 9 9 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 10 9 9 14 15 15 12 9 9 9 10 13 9 9 9 9 10 10 15 12 9 9 11 8 8 8 8 8 10 10 10 10 10 8 8 9 10 11 10 10 10 10 10 10 12 15 10 10 10 8 8 8 8 8 8 8 8 9 10 10 10 9 9 9 9 8 8 8 8 8 6 6 6 7 8 8 8 8 9 9 8 8 6 7 8 8 11 9 9 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 6 7 8 8 9 10 8 8 8 8 6 6 8 6 8 10 8 8 8 8 8 8 8 8 10 8 8 8 8 9 9 10 10 10 6 6 6 6 8 10 11 8 8 8 8 8 8 8 8 6 7 8 8 12 11 6 6 6 6 8 8 13 11 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 10 11 8 8 8 6 10 8 6 6 6 8 12 12 10 9 9 8 8 10 8 10 7 10 8 8 6 6 8 8 8 8 8 8 8 10 8 9 8 8 8 8 8 12 19 10 8 8 8 6 6 6 10 8 8 7 7 8 8 6 6 6 6 8 8 10 11 10 10 10 8 8 8 8 8 8 8 10 6 6 6 8 8 6 6 6 6 6 6 8 8 10 9 9 9 8 8 9 8 8 8 8 8 8 8 8 8 8 8 10 13 23 21 19 13 12 9 6 6 6 6 6 6 8 8 8 8 8 8 8 8 3 0 3 6 8 8 11 12 13 10 10 8 8 8 8 8 6 8 6 6 8 6 8 8 8 8 8 8 8 15 12 12 8 6 6 7 8 6 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 10 9 10 10 10 10 8 8 8 8 8 8 8 8 8 6 6 8 6 8 8 8 8 8 8 8 8 8 8 8 12 9 7 8 6 6 6 6 8 6 9 9 9 10 11 10 10 10 6 6 6 6 6 6 8 8 10 8 6 6 6 6 6 6 10 8 9 9 8 8 9 9 3 0	Open. Hide. 6 8 3 0 3 6 6 6 6 6 7 8 10 9 10 9 10 15 3 0 3 21 14 19 19 28 31 33 33 33 33 32 37 32 32 37 23 23 9 10 10 10 9 9 16 17 15 13 15 12 17 16 24 19 26 36 36 36 31 31 31 33 33 36 27 17 9 9 10 9 11 15 18 20 25 32 50 50 31 31 36 36 50 50 50 50 53 57 53 53 50 50 50 50 50 50 50 57 57 68 68 68 68 68 68 68 68 68 68 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 42 42 46 48 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 59 59 59 59 59 57 57 57 57 57 68 59 59 57 57 57 59 57 57 57 57 57 57 59 57 68 57 57 57 57 57 59 57 57 57 57 59 59 59 59 59 59 57 57 54 57 54 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 54 54 57 57 43 43 28 28 42 43 50 54 54 57 57 57 44 44 32 33 42 44 47 48 48 48 48 48 48 48 57 57 57 57 57 57 48 48 48 59 57 59 57 57 57 59 59 48 48 48 57 57 47 43 43 47 47 47 59 59 39 37 37 43 43 43 43 43 43 48 48 47 47 43 43 43 47 47 43 43 43 43 43 43 43 43 43 47 36 36 30 39 39 59 39 48 37 36 37 30 30 30 30 31 31 34 37 37 37 39 36 31 39 39 39 37 25 25 37 33 36 36 43 43 40 37 37 37 37 37 39 34 34 28 24 24 30 30 37 29 29 30 30 30 37 37 39 43 43 37 37 32 33 35 39 39 47 30 29 25 29 25 29 25 21 12 12 24 25 32 35 33 39 35 35 24 30 26 30 30 33 30 24 19 18 18 14 15 10 11 11 14 13 18 12 19 16 17 17 13 13 13 15 15 15 14 16 23 37 34 28 19 14 14 19 21 22 25 28 14 14 19 26 27 30 24 22 20 23 28 21 28 19 23 14 18 18 23 30 20 20 18 20 20 12 12 11 11 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no471_p08.g1 MSMg01no471_p08.g1 CHROMAT_FILE:
MSMg01no471_p08.g1 PHD_FILE: MSMg01no471_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:24 2005
         (572 letters)



>mm_chr19_57873857_57874829
          Length = 973

 Score =  853 bits (441), Expect = 0.0
 Identities = 465/473 (98%), Gaps = 2/473 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattatcatcataagggcatgtaatgacattaaaagcatttggagatcagaaaacaaaac 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 472 aattatcatcataagggcatgtaatgacattaaaagtatttggagatcagaaaacaaaac 413

                                                                       
Query: 61  tggggaattgccttcccagtgtt-agtaaaaacatccctggccaacatgtgtcctttgac 119
           ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 412 tggggaattgccttcccagtgttaaataaaaacatccctggccaacgtgtgtcctttgac 353

                                                                       
Query: 120 tctctgggccttaggaaaacaaacctggaaagaattcctcaatgaaataaaaatcctcta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tctctgggccttaggaaaacaaacctggaaagaattcctcaatgaaataaaaatcctcta 293

                                                                       
Query: 180 aactggtaatctgatcaaggtaacaagcaacatcgtgtctactatgaacatcaagataca 239
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agctggtaatctgaccaaggtaacaagcaacatcgtgtctactatgaacatcaagataca 233

                                                                       
Query: 240 gattggtctcacagcctttaatgtctttcattgtcctgtggaggcttgagaccccagcgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gattggtctcacagcctttaatgtctttcattgtcctgtggaggcttgagaccccagcgt 173

                                                                       
Query: 300 aaagggatgctacattggtgaagcggtaggggaggggggcaggggagcaccctcacagag 359
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aaagggatgctacactggtgaagcggtaggggaggggggcaggggagcaccctcacagag 113

                                                                       
Query: 360 gaaaagggaaggggggatgggaggggggacttgcagaggggaaactagaaagggggacaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gaaaagggaaggggggatgggaggggggacttgcagaggggaaactagaaagggggacaa 53

                                                                
Query: 420 aaattgaaatgtaaataaataaaataatcaattaaaaaaaaagaaaagtattt 472
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 52  aaattgaaatgtaaataaataaaataatcaattaaaaaaaa-gaaaagtattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space:   541206
Effective search space used:   541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information