Query= MSMg01no473_b14.b1 MSMg01no473_b14.b1 CHROMAT_FILE:
MSMg01no473_b14.b1 PHD_FILE: MSMg01no473_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:59 2005
(609 letters)
>mm_chr19_58093202_58094203
Length = 1002
Score = 1013 bits (524), Expect = 0.0
Identities = 584/616 (94%), Gaps = 25/616 (4%)
Strand = Plus / Minus
Query: 3 gaattcctaatga----attacggctcaaatcatacctcagaggttgccaaggatgtaag 58
||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gaattcctaatgaagagat---ggctcaaatcatacctcagaggttgccaaggatgtaag 746
Query: 59 gagcaaaaagaatttatcctggttatagctgtctctacgtattcataattcagggaatga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gagcaaaaagaatttatcctggttatagctgtctctacgtattcataattcagggaatga 686
Query: 119 attcagtttcactaaaaccccttcgtctgttcactcgtacatccacgggctaaatatcta 178
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 685 attcagtttcactaaaaccccttcgtctgttcacttgtacatccac-ggctaaatatcta 627
Query: 179 tcaaggtcctatgacatcctagccactgcttatgtgctgctggggacgtcggcttcggct 238
||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 626 tcaaggtcctatgacatcctagccattgcttatgtgctgctggagacg------tcggct 573
Query: 239 ttgggcaacatgaaggtggcaggttttgcagtaaaatg-----tttttttgtcttgtaga 293
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 572 ttgggcaacatgaaggtggcaggttttgcagtaaaatgaaggc-----ttgtcttgtaga 518
Query: 294 ttcagttggttacatagtaattagcacttactgaagttactgcagaataaacccagtcag 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttcagttggttacatagtaattagcacttactgaagttactgcagaataaacccagtcag 458
Query: 354 actgtgatgaaaaggagttgctacaatgtagctgaaattacaaagcattcatttcattaa 413
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 actgtgatgaaaaggaattgctacaatgtagctgaaattacaaagcattcatttcattaa 398
Query: 414 atccagagcgtgggattaaggaagccttggcccagaagctaccccagaacgagcagagaa 473
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atccagagc-tgggattaaggaagccttggcccagaagctaccccagaacgagcagagaa 339
Query: 474 gaggctgagccatcgagagagctccttcaaggccctaggttcactcttttctatcttatc 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 338 gaggctgagccatcgagagagctccttcaaggccctaggttcactcttttctatcttacc 279
Query: 534 ttctgaagtccgcagtaccacacagagagagcagagcaaacctggcccagcaccttctga 593
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttctgaagtccacagtaccacgcagagagagcagagcaaacctggcccagcaccttctga 219
Query: 594 ggcagtgttcccagca 609
||||||||||||||||
Sbjct: 218 ggcagtgttcccagca 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1002
Length adjustment: 10
Effective length of query: 599
Effective length of database: 992
Effective search space: 594208
Effective search space used: 594208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_b14.g1 MSMg01no473_b14.g1 CHROMAT_FILE:
MSMg01no473_b14.g1 PHD_FILE: MSMg01no473_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:59 2005
(494 letters)
>mm_chr19_57958410_57959303
Length = 894
Score = 897 bits (464), Expect = 0.0
Identities = 491/511 (96%), Gaps = 17/511 (3%)
Strand = Plus / Plus
Query: 1 catcaggttggaggaaaaggcggcaaaaagccgtgttgccagtggtggtctgaaacgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 catcaggttggaggaaaaggcggcaaaaagccgtgttgccagtggtggtctgaaacgcca 243
Query: 61 tttacctggctctgttattattcatgaacggtaatatttcatgaggatactgtaaaactt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttacctggctctgctattattcatgaacggtaatatttcatgaggatactgtaaaactt 303
Query: 121 tccaacaatttgtacttctaatttgttatgactagtacataaatgaa------------- 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tccaacaatttgtacttctaatttgttatgactagtacataaatgaaaagaaaacatttt 363
Query: 168 ----cggagtcattattttgattatcaactttgtgcattctcactatttatagctaagca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agctcggagtcattattttgattatcaactttgtgcattctcactatttatagctaagca 423
Query: 224 tgtaactttcacacaatttaatgtttaatagtacagtaataaaatgaaaacgtaagatag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgtaactttcacacaatttaatgtttaatagtacagtaataaaatgaaaacgtaagatag 483
Query: 284 ttgtgcaatttttggggttcatattttttaacgtcaacttacacatcactttctagttct 343
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 484 ttgtgcaatttttggggttcatattttttaatgtcaacttacacatcactttctagttct 543
Query: 344 gaaaagtcagcttacaagtggctttataggaaagtatcatttcctcacatttcaaagttt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gaaaagtcagcttacaagtggctttataggaaagtatcatttcctcacatttcaaagttt 603
Query: 404 atttttagggtgtagggaaacactagaattttccctccctttcctcttttagaattcgaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atttttagggtgtagggaaacactagaattttccctccctttcctcttttagaattcgaa 663
Query: 464 tcanaagcacttgaggatattttctcttact 494
||| |||||||||||||||||||||||||||
Sbjct: 664 tcaaaagcacttgaggatattttctcttact 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
