BAC Information

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BAC

Clone NameMSMg01-473E08
Chromosome19 (Build37)
Map Location 17,551,318 - 17,735,948
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneGna14, LOC666665, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473E08.T7 (MSMg01no473_e08.b1)MSMg01-473E08.TJ (MSMg01no473_e08.g1)
ACCAG555609AG555610
length764788
length of high quality
(start - end)		518 (68 - 585)426 (74 - 499)
definitionCHROMAT_FILE: MSMg01no473_e08.b1 PHD_FILE: MSMg01no473_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:17 2005CHROMAT_FILE: MSMg01no473_e08.g1 PHD_FILE: MSMg01no473_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,551,318 - 17,551,835)(17,735,523 - 17,735,948)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGTTTGTGACATGGCCCTTCCCCAAGATATATCATTTATATGTAA
CCTTTCCGATATATGAGAAAAAAATGTGAAATCTGAAATGCTTCTTGCCA
AGTATTTCAGCCGAGGGTTCTACTGGTAACTCAGGTTGGCCCATCCTTCT
GAGATGCTTCAGCTTTCAGGGCTGCCTTTTCTCCTGTCTTGCTCACTGCT
TCCACCATTTCCTCATCTACTGTTTTCAGATCTTAGACTCTGTCAAGGTG
AGACAATATGGTGACAGAAGGTGGTGACCCACAAAAATGGATATGTGGGC
TTGCCACTAGTTTCTGCTGTAGAGTGAGCAGGGCACTGGAGCCTCCCTGA
TCTACTCTTTCTGTTTCTTGGACTCATACAGATCTCAAGTTGCTTACAAG
CTGGTGAAAGATGGAGAAGAGAGGAGGTGAGAGCTGTGGGTGGTCGAATA
GGACCCGTGCAGGCCATGGATTAGTCTGACCTCCCCTTCACTTCCATCTT
TCTTTTTGTGTTGGTTTCCTTCTAGCACAGGAGGTGAGGCTAGCTGGAAG
GGAAAGCAGCTGGGACAGGATGTCATATTGAAGCATGCAAGCTTGGCTTT
AATAAGTCTATATGGGAGAATGCTAGCCTGATGCCGATCTGCCCTTCATT
TTACCTAGCAGGCCATGCCTCTTATCACCCATGTGGTAATTAAGAAGAAA
GTGCCCTTCCCTGG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATACTGCCAGCCCATGGACTAGCACT
CAAACAATGTTGTAAAATGGTATTAAGTGTTGGCTGGTTACACAGGGTCT
TTAAATATCTGCCAGTCAGCTTAAAATATATTTAACCATAAAAATAAAAT
TCATTTTTAGTAGAAATGCTTGTTCCAATGACCAGCAGCTGACTCCATAA
CCCTTATTGGGCTCTCTAAGCCTTTAAAAACTAAGCTGACTGCATTGGGT
ATGCTCAGTGAGCATATAAAATTCATTTTTATTTGTGTGTGGTTGTATAA
AATTAATACGGTTGCTAATAACTGCATCTAATTTTTCAGTGTTTTATTAA
AAAGTCAAAGAACGTTAAGAAATGGATTTAAATACTTGGTTTAGTAGTCT
AGTGTGTGCACAGAAAGGCAGAATACAGAGGAGCCAGGTCAGAGCTGAGA
AGAGGGGCAGTTGAGATGGCTGGGATGAAGGGACTGAGCTTGGAGCTCAC
AGGAATTCAGAGCTAGGGACCAGCAGTGCTTGCTCACAGGCCCCTTTCTT
TCTGAGCACTCAGTGCATTTCTTTCCCCAGGGGAACTGGAAACTATTGGC
CCTTACAATCCAAGTTGTTTTTACTCAGATCCTTTGGAGGGGGGGGAAGG
GAACAAATAAAAATTCTCCTCTTATTTTCCGTTGTTGAATCAGGCTTCAT
TGGGTGTCGCGGTAAATACCCTCCTACTAAAAACANGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_e08.b1 MSMg01no473_e08.b1 CHROMAT_FILE:
MSMg01no473_e08.b1 PHD_FILE: MSMg01no473_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:17 2005
         (518 letters)



>mm_chr19_17551118_17552035
          Length = 918

 Score =  940 bits (486), Expect = 0.0
 Identities = 510/518 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcccttccccaagatatatcatttatatgtaacctttccgatatatgagaaaaaaatgt 60
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 201 ggcccttccccaagatatatcatttatatataaccattccgatatatgagaaaaaaatgt 260

                                                                       
Query: 61  gaaatctgaaatgcttcttgccaagtatttcagccgagggttctactggtaactcaggtt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatctgaaatacttcttgccaagtatttcagccgagggttctactggtaactcaggtt 320

                                                                       
Query: 121 ggcccatccttctgagatgcttcagctttcagggctgccttttctcctgtcttgctcact 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ggcccatccttctgagatgcttcagctttcagggctgcctttcctcctgtcttgctcact 380

                                                                       
Query: 181 gcttccaccatttcctcatctactgttttcagatcttagactctgtcaaggtgagacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gcttccaccatttcctcatctactgttttcagatcttagactctgccaaggtgagacaat 440

                                                                       
Query: 241 atggtgacagaaggtggtgacccacaaaaatggatatgtgggcttgccactagtttctgc 300
           ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 441 atggtgatagaaggtggtgacccacaaaaatggagatctgggcttgccactagtttctgc 500

                                                                       
Query: 301 tgtagagtgagcagggcactggagcctccctgatctactctttctgtttcttggactcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtagagtgagcagggcactggagcctccctgatctactctttctgtttcttggactcat 560

                                                                       
Query: 361 acagatctcaagttgcttacaagctggtgaaagatggagaagagaggaggtgagagctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagatctcaagttgcttacaagctggtgaaagatggagaagagaggaggtgagagctgt 620

                                                                       
Query: 421 gggtggtcgaataggacccgtgcaggccatggattagtctgacctccccttcacttccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggtggtcgaataggacccgtgcaggccatggattagtctgacctccccttcacttccat 680

                                                 
Query: 481 ctttctttttgtgttggtttccttctagcacaggaggt 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttctttttgtgttggtttccttctagcacaggaggt 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no473_e08.g1 MSMg01no473_e08.g1 CHROMAT_FILE:
MSMg01no473_e08.g1 PHD_FILE: MSMg01no473_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:17 2005
         (426 letters)



>mm_chr19_17735323_17736148
          Length = 826

 Score =  801 bits (414), Expect = 0.0
 Identities = 423/426 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catactgccagcccatggactagcactcaaacaatgttgtaaaatggtattaagtgttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 catactgccagcccatggactagcactcaaacaatgttgtaaaatggtattaagtgttgg 567

                                                                       
Query: 61  ctggttacacagggtctttaaatatctgccagtcagcttaaaatatatttaaccataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctggttacacagggtctttaaatatctgccagtcagcttaaaatatatttaaccataaaa 507

                                                                       
Query: 121 ataaaattcatttttagtagaaatgcttgttccaatgaccagcagctgactccataaccc 180
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 506 ataaaattcatttttagtagaaatgcttgttccaatgaccagcaaccgactccataaccc 447

                                                                       
Query: 181 ttattgggctctctaagcctttaaaaactaagctgactgcattgggtatgctcagtgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttattgggctctctaagcctttaaaaactaagctgactgcattgggtatgctcagtgagc 387

                                                                       
Query: 241 atataaaattcatttttatttgtgtgtggttgtataaaattaatacggttgctaataact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atataaaattcatttttatttgtgtgtggttgtataaaattaatacggttgctaataact 327

                                                                       
Query: 301 gcatctaatttttcagtgttttattaaaaagtcaaagaacgttaagaaatggatttaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcatctaatttttcagtgttttattaaaaagtcaaagaacgttaagaaatggatttaaat 267

                                                                       
Query: 361 acttggtttagtagtctagtgtgtgcacagaaaggcagaatacagaggagccaggtcaga 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 266 acttggtttagtagtctagtgtgtgcacagaaaggcagaatgcagaggagccaggtcaga 207

                 
Query: 421 gctgag 426
           ||||||
Sbjct: 206 gctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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