Query= MSMg01no473_e17.b1 MSMg01no473_e17.b1 CHROMAT_FILE:
MSMg01no473_e17.b1 PHD_FILE: MSMg01no473_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:19 2005
(246 letters)
>mm_chr19_59136283_59136925
Length = 643
Score = 443 bits (229), Expect = e-129
Identities = 240/245 (97%), Gaps = 3/245 (1%)
Strand = Plus / Minus
Query: 1 agagccatctacctaactctgcagatacattcaaacgctaagtaattgaagtcaaagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agagccatctacctaactctgcagatacattcaaacgctaagtaattgaagtcaaagtct 383
Query: 61 cttaataagatctttttatctttgtgttgttgaagcagtattaggtaaaacagtggtatt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 382 cttaataagatctttttatctttgtgttgttgaagcagtattaggtaaaaca---gtatt 326
Query: 121 tggggccatgaccataagccacactacccagcggcatcagtgcatatttaggattctctt 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 tggggccatgaccataagccacactacccagcggcatcaatgcatatttaggattctctt 266
Query: 181 tctcagcttttgctaaaggggggcacatttggatgattttctaggttctaggacaaatta 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 tctcagcttttgctaaaggggggcacatttcgatgattttctaggttctaggacaaatta 206
Query: 241 gctca 245
|||||
Sbjct: 205 gctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 643
Length adjustment: 9
Effective length of query: 237
Effective length of database: 634
Effective search space: 150258
Effective search space used: 150258
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_e17.g1 MSMg01no473_e17.g1 CHROMAT_FILE:
MSMg01no473_e17.g1 PHD_FILE: MSMg01no473_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:19 2005
(379 letters)
>mm_chr19_58912365_58913146
Length = 782
Score = 619 bits (320), Expect = 0.0
Identities = 371/402 (92%), Gaps = 23/402 (5%)
Strand = Plus / Plus
Query: 1 tttacagagctgaagtgggggagcagatctggaacagagcaaagccaggcaatagaatgt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 181 tttacagagctgaagtgggggagcagatctggaacaaagcaaagccaggcaatagaatgt 240
Query: 61 gtattaattttcaggggcatggagagactgcagatagccagggtgttcacacaccccagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtattaattttcaggggcatggagagactgcagatagccagggtgttcacacaccccagt 300
Query: 121 gtgtgtgtgtgtgtgtgtgt--------------------taactgagcatgagaaggtt 160
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaactgagcatgagaaggtt 360
Query: 161 taagataaagcgtcctcctaggaccctttgttct---ctcatacccagtccagacatgct 217
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 361 taagataaagcgtcctcctaggaccctttgttctggtctcatacccagtccagacatgct 420
Query: 218 tgggcccaggaaatgagcctttgtactgtaatctttatgcatggatggccaatagcccca 277
||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 421 tgggcccaggaaatgagcctttgtactgtaaccaccatacatggatggccaatagcccca 480
Query: 278 tctgggcttagggagaagatcttgggcacccatggtggttcatttgccccttcggccctg 337
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 481 tctgggcttagggaggagatcttgggcacccatggtggttcatttgcccctttggccctg 540
Query: 338 ttcttgtcgtccacaggcatattcctccaaagacgcagcact 379
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttcttgtcgtccacaggcatattcctccaaagacgcagcact 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 782
Length adjustment: 9
Effective length of query: 370
Effective length of database: 773
Effective search space: 286010
Effective search space used: 286010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
