BAC Information

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BAC

Clone NameMSMg01-475D17
Chromosome19 (Build37)
Map Location 34,663,757 - 34,664,133
singlet/doubletsinglet
Overlap genenone
Upstream geneAI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3
Downstream geneOTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464, LOC100042292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475D17.T7 (MSMg01no475_d17.b1)MSMg01-475D17.TJ (MSMg01no475_d17.g1)
ACCAG557106AG557107
length771764
length of high quality
(start - end)
487 (48 - 534)374 (76 - 449)
definitionCHROMAT_FILE: MSMg01no475_d17.b1 PHD_FILE: MSMg01no475_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:56 2005CHROMAT_FILE: MSMg01no475_d17.g1 PHD_FILE: MSMg01no475_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:56 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTGCCCTGAGCCCCATTATTTTAATAGGGTTATTTGAT
TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCC
TTTTTGTCTTATTGATGGTGTCTTTTGCCTTGCAAAAGTTTTGCAATTTT
ATGAGGTCCCATTTGTCAATTCTCCATCTTACAGCACAAACTATTGCTGT
TCTATTCAGGAATTTTTCCCCTGTTTTCATATCTTCGATGCTTTTCCCTA
CTTTCTCCTCTATGCGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTA
ATCCACTTAGATTTGACCTTANAACAAGGAGATAGGAATGGATCAATTTG
CATTCTTCTACATGATAACAACCCATTGTGCCAGCACCATTTGTTGAATA
TGCTGACTTTTTTCCACTGGATGGTTTTTGCTCCCCTTGTCCAGATCAAG
TGACCCTATGCGTGCGGCTCCATTTCTGGGTCTTTCATTCCCCTTTCCTT
GCTCCACTTGGCTGTTTCCCTCACATTAACCCTCCTTCTCTCTCCACATT
GCCTCCTGTTCCTCCCCCTTTTATTCCCGCTCTCGCTGCTTTCCCCCTAT
AATCCCCCTCTTTTCCCTCTTTATATCTTCCCCGTATCTCTCAGTCCTTT
TTGCCTGTTCCTCATTTCTTG
NCCCGATGATGNTGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGCCTATCTTGGCTGACAGGGCA
ACTCTGTCTGAAAGCAACAGCAACAATACTGTGTGCAACTGAACATATGA
AGAGTGTCAGAGACCCTTCTGAAGGATGAGCAAAGGGAAAGTCTCAGAAG
CAGGTGCTGACCACCTGTGTCCTCACACACGGATGGGAGGGTGTTTGCTC
AGGTATTTCTGGGCCCCCAGAGGTGTGGCCAAACACTTAGCTCCTAACTG
TACACAGGTCTCAACTGGATTGTGTGGACTGCAAGAAGAATGGAAGTTCC
TATATACATGGGTTATACTTGGTTAGCTCAGTGCAGACGTAGATGCTAAA
ACACCTGTGTTTTGATACTCTGATGAGCATTCACAATTTCCAATCATCTT
ACCAGAGGAAGGACCTTGAAAAGACTGGGAAATTTTCTTCCCTGTGCATA
ACAATACTGACCATGTCCATCCTCCTTGTCTCCCCCTCTTGATCCCCAAG
ATCTCTCCCCCTGTCTTTCCACCCGATTTCTTTGGTCTTTTCTATTTTTA
AAACTCGTCCTGTTTCCTTCCCCAAGTGCTTTGCCCTCCCTTTCCCCCCC
CCTCCTCCATTCAGCTAACCCTTTCGTCCCCCTATTATCCGCTTCTCCCT
TCCCTTCCTTTCCTCTCCCCTCTTTCGCCTTCCTCTTCCCTCTTCTCCCC
TTCCCTCTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_d17.g1 MSMg01no475_d17.g1 CHROMAT_FILE:
MSMg01no475_d17.g1 PHD_FILE: MSMg01no475_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:56 2005
         (374 letters)



>mm_chr19_34663557_34664333
          Length = 777

 Score =  675 bits (349), Expect = 0.0
 Identities = 369/377 (97%), Gaps = 3/377 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcctatcttggctgacagggcaactctgtctgaaag---caacagcaacaatactgt 57
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 577 catgcctatcttggctgacagggcaactctgtctgaaagcaacaacagcaacaatactgt 518

                                                                       
Query: 58  gtgcaactgaacatatgaagagtgtcagagacccttctgaaggatgagcaaagggaaagt 117
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 517 gtgcaattgaacatatgaagagtgtcagagacccttctgaaggatgagcaaagggaaact 458

                                                                       
Query: 118 ctcagaagcaggtgctgaccacctgtgtcctcacacacggatgggagggtgtttgctcag 177
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 457 ctcagaagcaggtgctgaccacctgtgtcctcacacaaggatgggagggtgtttgctcag 398

                                                                       
Query: 178 gtatttctgggcccccagaggtgtggccaaacacttagctcctaactgtacacaggtctc 237
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtatctctgggcccccagaggtgtggccaaacacttagctcctaactgtacacaggtctc 338

                                                                       
Query: 238 aactggattgtgtggactgcaagaagaatggaagttcctatatacatgggttatacttgg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aactggattgtgtggactgcaagaagaatggaagttcctatatacatgggttatacttgg 278

                                                                       
Query: 298 ttagctcagtgcagacgtagatgctaaaacacctgtgttttgatactctgatgagcattc 357
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttagctcagtgcagacatagatgctaaaacacctgtgttttgatactctgatgagcattc 218

                            
Query: 358 acaatttccaatcatct 374
           |||||||||||||||||
Sbjct: 217 acaatttccaatcatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 777
Length adjustment: 9
Effective length of query: 365
Effective length of database: 768
Effective search space:   280320
Effective search space used:   280320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)