BAC Information

Click to search

BAC

Clone NameMSMg01-475H02
Chromosome19 (Build37)
Map Location 16,581,380 - 16,581,704
singlet/doubletsinglet
Overlap geneGna14
Upstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, LOC666665
Downstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H02.T7 (MSMg01no475_h02.b1)MSMg01-475H02.TJ (MSMg01no475_h02.g1)
ACCAG557268AG557269
length756767
length of high quality
(start - end)
331 (28 - 358)89 (82 - 170)
definitionCHROMAT_FILE: MSMg01no475_h02.b1 PHD_FILE: MSMg01no475_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:13 2005CHROMAT_FILE: MSMg01no475_h02.g1 PHD_FILE: MSMg01no475_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCCATTGTTTTTC
CACTGTGTTTCCTGCACATGAGCCGCCTCATTTGCTTTCAGCTCTCAGGG
TTTGCATGTACTGTGCACTCGTGTGTGATAAAGATGTGAGATTTCTATCC
TCTGCTGCTGAATCACTTCGTTTGCGGGAGGAATCCAAATTGGTTTCATT
CAGATGTGAGAGTCATTGGACATCCCATAATGGTACCCATATTTTTGTTC
TTAGAAACTGGAAGATCTAATACTGAGATCTGACTCTGCCTGGGGCAGAG
ATATTCTTATTAAGACCAGCAGGAGGCCCTGAGATCTGAGGCTGATTAAT
GGAGACAAAGGCCACATAGAATAAGTCTGCTGAGAACAGGGTCCATTTCA
TTGAAACATTTCATTGGAAATACTGCAGCAGAGAAACTTAATGGAAATTT
CATTTGGAAGAGAATATTATTAAATACAATGTTGCTTGATCCTTACGCTT
CATAATTTTAAGTTACAGTGTCTACAGGGGTTTGAGTCTGTATGTCTCAA
CCTTGCCTGATATAAGTCTTGACTCCTTCTTGCGTAATTTTGGCGGCTTA
AATGTACATATTCATCCTCTGCTTCCCCTCCCTTTTCTTCCCTTTTCTTA
GTTTCCACTTACCTTTTCCTCTTCCTTTCTTCTTTTTTCTTCTCTCTTCT
GCTCTCCTCCTCCTCTTTTCCATTTTCTCTTTTTCTTCACATCTACATTT
CCCTTT
NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAAAACAATGTCGATG
GCTAAGTTATTTTGTTAGTAATTCTTGAATAATAAGGAATTTAAGCAGAC
TATGTGTTGAAGGAAGTGGTGACAAATGACTAAAGTGTGAGATAAGAGAA
CCCTGACTCAGTTCTTTTTGAGTGCGTATGGGAGCACTCAGAGTTTAACA
AGAGAGAACATTTTCTTCATTGCTGGACCAAGTCTGTTATCAATATTATT
ATTCATTTTTTCCCCTTTTCTATTTGTTATTTTATCTCTTGACATTCCTC
ATGTTATCTCCCTTCCCAGCTTCCCCCCCCCTATTTCCCCTCCCCTCCCT
CTTCCCTGCTGTTTCTACGAGCGTCCTTCTCCCCTCACTTTTCTTCCCCA
CCCTCCCAGCTTTTCTCTACCCTGGGTCATCCCCCCTTCCCTTTATTTCC
GCCTTTCTCCTTCCCTCACGTCCGCCTTACTTGCCCCTCCTTTCCCTTCT
CCCCCCGTCACCTTTGCTCCCTCACCTCCGTCCTTTTTCCCTCCCTCCTT
TCCCTCTTTTCCTTCCCCCCCCCCTCCCTTTTTCCTTTTTTCTCCCCTTC
CCTCCCCTATCCCTCCTCCTTTCCCCTTTTTCTTCTCCTCTTTCCCGCCC
CCTCCTCTTTTTCTCCCCCTCCCCCCTATCTTTTCTCTTTTCCCCCCCTT
TTCTCCCCCTTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h02.b1 MSMg01no475_h02.b1 CHROMAT_FILE:
MSMg01no475_h02.b1 PHD_FILE: MSMg01no475_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:13 2005
         (331 letters)



>mm_chr19_16581174_16581904
          Length = 731

 Score =  574 bits (297), Expect = e-168
 Identities = 318/325 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccattgtttttccactgtgtttcctgcacatgagccgcctcatttgctttcagct 66
           ||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccattgtgagtcgactgtgtttcctgcacatgagccgcctcatttgctttcagct 266

                                                                       
Query: 67  ctcagggtttgcatgtactgtgcactcgtgtgtgataaagatgtgagatttctatcctct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctcagggtttgcatgtactgtgcactcgtgtgtgataaagatgtgagatttctatcctct 326

                                                                       
Query: 127 gctgctgaatcacttcgtttgcgggaggaatccaaattggtttcattcagatgtgagagt 186
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gctgctgaatcacttcatttgcgggaggaatccaaattggtttcattcagatgtgagagt 386

                                                                       
Query: 187 cattggacatcccataatggtacccatatttttgttcttagaaactggaagatctaatac 246
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cattggacatccgataatggtacccatatttttgttcttagaaactggaagatctaatac 446

                                                                       
Query: 247 tgagatctgactctgcctggggcagagatattcttattaagaccagcaggaggccctgag 306
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 447 tgagatctgactctgcctggggcagagatattctaattaagaccagcaggaggccctgag 506

                                    
Query: 307 atctgaggctgattaatggagacaa 331
           |||||||||||||||||||||||||
Sbjct: 507 atctgaggctgattaatggagacaa 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)