BAC Information

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BAC

Clone NameMSMg01-475H10
Chromosome19 (Build37)
Map Location 15,794,535 - 15,794,777
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433225, EG635497, Pomc-ps1, LOC667482
Downstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H10.T7 (MSMg01no475_h10.b1)MSMg01-475H10.TJ (MSMg01no475_h10.g1)
ACCAG557284AG557285
length708775
length of high quality
(start - end)
245 (49 - 293)208 (79 - 286)
definitionCHROMAT_FILE: MSMg01no475_h10.b1 PHD_FILE: MSMg01no475_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:15 2005CHROMAT_FILE: MSMg01no475_h10.g1 PHD_FILE: MSMg01no475_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCCTATTACAAGACGCACCGCGGAATTAAGTATTCCCCATCAATTAAG
ACAATCAGAAAATACAAAGAGACTGTGTGAGTTCTTTGGATCACTACTCA
GACACAAACCTTATGAACCATAGGGTGAGAATGAGAAGAATGTTAATATA
AAGGCATACTGAATATATTCAATAGGCGCTTGGCAAATAGCTTAGCAGGA
AAAGGCATTTGCCACGCAAGCTGTACTACCAGAGTTCAATCCACAGAATG
CAGTAGAAGGAAAAATAGATTCTAGAAGGATGTCTGTAGACNNCTTTGTC
TCCACACACACCATGGCATGTAACTGTCCCCATTACCATGTAACAGAGAG
AGAGACAGAGACAGACACACAGACAGAGACAGACACACAGAGACAGAGAG
AGACAGAGACTCAGACAGAGACTGAGACAGAGAGAATTTTCCTAAACAGA
ACTCCAATGGCTCATGCTCTAAGATCAAGAATTGATAATGGGACCTCCTA
AAAGTGAAAATTTTCTGTAAGGCAAAGGACATTGTCCATAGGACAAATCT
GCCACCTATAGACTGGAAAACAATCTTCATCTGATATAGGGCTAATATCC
CAAATATATAAAGAACTCACGAAGCTCTTCTTCCTTAAACACATCAACCC
ATTCCCAAAACTGGGTCATAGAACTTTCCGCATAAGTCTCCACCAGAGAA
ATCTTCTT
TTTTCCGATGATAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGAAGTAATGAACTCACAC
AACTTCTCACTGTTATTATTTTTCTCACTTATTTCTAGAGAAAAATTAAG
GGTTGCGATATAGCTCAGCAGTGAGTGCTTATTTAATATTTATGAAATCT
TGGGTTTAATTCTCACAACCACCATAAGTAACTGATAAACATCCTTCTTC
CCGCCTTGTTCGGCCACTCAAGAAATGCCAGGCTCAGTCGGGCAGTGGTG
GCGCACGCCCTTAATTCTTTCACTCCGGAGGCAGAGGCAGGCGGATTTCT
GAGTTCGAGTCCATCCTGGCCTATTAAGCGAGTTCCAGGACAGCCAGGGC
TACTCAGAGAAACCCTGTCTTGAATACCCTTTTATTCCCTTCCCCACCCC
CTTTTCCTTTTCGCCCGGCTCTTCCCCGGCGATGGTTGTATACCCTCCTC
TCCCATTCCCCACGCATATTCACTCCTTGCGCATTCTCCTCATCTTTCAT
CCCCCCCCTGCTTCACTCTTCTCTCCTTCTGCCCATTTCCCTTCACGCCT
TCTCCTCTAATCCTTCCCCTCCCCCTCCCTTTTTTCTTTTTTTCCTCCCT
TCCCTCTCTCCTTTCCTTCCCCCTTTACTCCTTTTCCTTCTCCTTCTTCC
CCCCCCCCTTCTCTTTTTCCCCCCCTCCCCCCTTTTTTTTCTCTCTTCCC
CCGCCTTTCCTCCCCTCTTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h10.b1 MSMg01no475_h10.b1 CHROMAT_FILE:
MSMg01no475_h10.b1 PHD_FILE: MSMg01no475_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:15 2005
         (245 letters)



>mm_chr19_15794335_15794979
          Length = 645

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacaatcagaaaatacaaagagactgtgtgagttctttggatcactactcagacacaaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agacaatcagaaaatacaaagagactgtgtgagttctttggaacactactcagacacaaa 260

                                                                       
Query: 61  ccttatgaaccatagggtgagaatgagaagaatgttaatataaaggcatactgaatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttatgaaccatagggtgagaatgagaagaatgttaatataaaggcatactgaatatat 320

                                                                       
Query: 121 tcaataggcgcttggcaaatagcttagcaggaaaaggcatttgccacgcaagctgtacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 321 tcaataggcgcttggcaaatagcttagcaggaaaaggcatttgccacgcaagctggacaa 380

                                                                       
Query: 181 ccagagttcaatccacagaatgcagtagaaggaaaaatagattctagaaggatgtctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagagttcaatccacagaatgcagtagaaggaaaaatagattctagaaggatgtctgta 440

              
Query: 241 gac 243
           |||
Sbjct: 441 gac 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)