Query= MSMg01no475_l16.b1 MSMg01no475_l16.b1 CHROMAT_FILE:
MSMg01no475_l16.b1 PHD_FILE: MSMg01no475_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:36 2005
(499 letters)
>mm_chr19_53672590_53673490
Length = 901
Score = 886 bits (458), Expect = 0.0
Identities = 484/494 (97%), Gaps = 5/494 (1%)
Strand = Plus / Minus
Query: 10 tctaagcctt--ttccagttcctcaggatgacggctgggtttgcagtgcagttggtaaag 67
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tctaagccttcatt-cagttcctcaggatgacggctgggtttgcagtgcagttggtaaag 843
Query: 68 ccctagtttgtcatacaggaggtcttacactcttccccagcactgggtagcctagtggca 127
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 842 ccctagtttgtcatacaggaggtcttagacgcttccccagcactgggtagcctagtggca 783
Query: 128 cacatctgtgatcccagaaccctgggaaggtggatgcaagatcaaaagttcaagttcatc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 782 cacatctgtgatcccagaaccctgggaaggtggatgcaagatcaaaagttcaaattcatc 723
Query: 188 tactgattagtgggtttgaaggagaccctatttttcaataatagtgaagtcaccagaact 247
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tactgcttagtgggtttgaaggagaccctatttttcaataatagtgaagtcaccagaact 663
Query: 248 tttatgatggtttccactacaatgagatttttactttctttcttaggcctttacacattt 307
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 662 tttatgatggtttccactacaatgagatttttactttccttcttaggcctttacacattt 603
Query: 308 tatgaactttattcagttagcttgtataatcatataaataggggaaaaagg--ttttttt 365
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 602 tatgaactttattcagttagcttgtataatcatataaataggggaaaaaggttttttttt 543
Query: 366 ttaaatctctacaatatcaaataagtgattttagactattgccttgtttatatttattgt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttaaatctctacaatatcaaataagtgattttagactattgccttgtttatatttattgt 483
Query: 426 ctctctccatgatagtaaaatctaagagatgaagaatttcattttgttactattgctctc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctctctccatgatagtaaaatctaagagatgaagaatttcattttgttactattgctctc 423
Query: 486 ttcaattattttgc 499
||||||||||||||
Sbjct: 422 ttcaattattttgc 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 901
Length adjustment: 10
Effective length of query: 489
Effective length of database: 891
Effective search space: 435699
Effective search space used: 435699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_l16.g1 MSMg01no475_l16.g1 CHROMAT_FILE:
MSMg01no475_l16.g1 PHD_FILE: MSMg01no475_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:36 2005
(400 letters)
>mm_chr19_53480247_53481046
Length = 800
Score = 687 bits (355), Expect = 0.0
Identities = 397/425 (93%), Gaps = 27/425 (6%)
Strand = Plus / Plus
Query: 1 acctgactcccaagataactttctgtagttacagaaaggaagtgacagctgagatcttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctgactcccaagataactttctgtagttacagaaaggaagtgacagctgagatcttga 260
Query: 61 agaaaaccttgttccttgagtttatgactcagaggaaaagctacagtgctcctgatgtga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 agaaaaccttgttccttgagtttatgactcagaggaaaagctacagtgctcctgatctga 320
Query: 121 catctcagc-ccccccc-----cca-----ac---------t-----taagacagggaac 155
||||||||| ||||||| ||| || | |||||||||||||
Sbjct: 321 catctcagcacccccccaccccccacccccaccaccccccctcgacctaagacagggaac 380
Query: 156 tatggaacagggccccagccacaaagtgaaagagttagttaggaaaactttgtttctttt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tatggaacagggccccagccacaaagtgaaagagttagttaggaaaactttgt--ctttt 438
Query: 216 tacttccttctagtttagtgttttgagacagggccatgtggaactagttggcctttcgct 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tacttccttctagtttagtgttttgagacagggccatgtggaactagttggcctttcgct 498
Query: 276 cattatgtagccatggctggtcttgaactcccaattatcttgcttctgtttctaaccggc 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cattatgtagccatggctggtcttgaactcccaattatcttgcttctgtttctaaccggc 558
Query: 336 ttaggctactaagactctcatacacagttcgatttagtaaatgagtgatattgggaaact 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttaggctactaagactctcatacacagttcgatttagtaaatgagtgatattgggaaact 618
Query: 396 aacgg 400
|||||
Sbjct: 619 aacgg 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
