BAC Information

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BAC

Clone NameMSMg01-475M05
Chromosome19 (Build37)
Map Location 15,649,267 - 15,649,512
singlet/doubletsinglet
Overlap genenone
Upstream geneTle4, EG433225, EG635497, Pomc-ps1
Downstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475M05.T7 (MSMg01no475_m05.b1)MSMg01-475M05.TJ (MSMg01no475_m05.g1)
ACCAG557513AG557514
length781752
length of high quality
(start - end)
246 (78 - 323)406 (80 - 485)
definitionCHROMAT_FILE: MSMg01no475_m05.b1 PHD_FILE: MSMg01no475_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:39 2005CHROMAT_FILE: MSMg01no475_m05.g1 PHD_FILE: MSMg01no475_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCACAAATCCG
CGGAANTCNATTTACTTTCACCACAAGCTTAGAAAATTTTTCTGCCATTA
TTTCTTCCATATATTCTTTCTCCACCTCCCAATACACTTTTATTTCTGCA
GCTTCATTGGCACACTATTATATTTGCTAGTATATAAGGCTCACAAACAA
CCCTGGGCTTTCTTTTCTTTTCATGCTTCAGATTTTATGATTTATAGTGG
CCCGGCTTCAAGATCACCAAGTTGTTTTTTTTGTTTGCTTTTTTTTGTTT
TTTGCTTTTTATCTGTTTGATTTTGTTTCTCCTACTAACCAAACATGGAA
GCTTTCCCAGCTGTTATGTACAAAGATTCTTGCCTGTGCATTACTTTCTT
TCATAGAGAAATAATCTTCCATGGATAAATGAACATTCTGTATAGTCCAT
GCCTACCATGCTTTTCAAATCCTCAACCTTAACCTGTATAGAATACCCTC
TTGACTAGCACAACCCTTATTGTCCCCAATACATAATTAGCACAATCTTT
AATAGTTACCCTCTCATTTCCACCCCACGTACCCCCCGCACCCCCAGTAC
CAAGCAAACCCCTTTTTATTCCGTTTACTCCCCCCCCCCAAACTAACCCT
TTGTCCAATTACCTTTTAACCTTTTCTGCTCCACGTCTTTTTCCTTTCTA
TAATTCCTTCTCTCTATCTCCCCATTTTCTCCCCCATCATTTCCACCCCC
CTTTTTTCCCTTCTTTTCTCTTTCTTCTCTN
NNNNCCGAAGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTCTCTGCAAGAGTGACA
AATTCTCTCGACCACTGGCCAGCTATCTTGTGTAAGCACTATAGATGGTA
TAACTGGGTTATATGATAACACTTGCCTCATTCCAGATTTCAGAGGAAAT
GCTATCAAGTTTTCTCCATCTACTATAATGTCAGGTATAGGCTTGCTGTG
TAGTCTTTGTTATGTTGAGTTATGCTACTTCTATTTCTAGTTTCCTCAAA
TGTATCATGAAGAAATATTGAACTTTGTTTAGTGACTTTTCTGAATGGAG
ATCATTATTTGGTTTCTGTCATAATCTATTTATATATAAAGTTAATAATA
ATAATATTATTATTATTTATTATTATTTTCTTCACCACCTCTTGAAACAG
ATCTCACTGTGTAGTCCTGGCTGGCCTGCAACCTAGGTCAGATGAACCTA
ACCTGGAACTAGAGGTTAGGCTGTTTTGCTTCCTGAATGCTAGGATTAAA
GACATGAACCATCCGTTCAGGATTATATATACAATCTTCTTAAAATATTC
TTTGATTTAAGTCTCACCAAATTTTATGGACGGCCTTGCATGTGGTTAAC
TTACGAAAACGGCCCCTTTCCTCGTTTTTTTTGTTCGCACCCTCTCCCGG
TACCCCCTTTCCCTCCCCTACCCATCGGGCCCCTTTATACCCGTTCCGCC
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_m05.b1 MSMg01no475_m05.b1 CHROMAT_FILE:
MSMg01no475_m05.b1 PHD_FILE: MSMg01no475_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:39 2005
         (246 letters)



>mm_chr19_15649067_15649713
          Length = 647

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagaaaatttttctgccattatttcttcca-tatattctttctccacctcccaataca 59
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cttaggaaatttttctgccattatttcttccaatatattctttctccacctcccaataca 260

                                                                       
Query: 60  cttttatttctgcagcttcattggcacactattatatttgctagtatataaggctcacaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttatttctgcagcttcattggcacactattatatttgctagtatataaggctcacaa 320

                                                                       
Query: 120 acaaccctgggctttcttttcttttcatgcttcagattttatgatttatagtggcccggc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaccctgggctttcttttcttttcatgcttcagattttatgatttatagtggcccggc 380

                                                                       
Query: 180 ttcaagatcaccaagttgttttttttgtttgcttttttttgttttttgctttttatctgt 239
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 381 ttcaagatcaccaagttgttttttttgtttgtttttttttgttttttgttttttatctgt 440

                 
Query: 240 ttgatt 245
           ||||||
Sbjct: 441 ttgatt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space:   151206
Effective search space used:   151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)