BAC Information

Click to search

BAC

Clone NameMSMg01-476D04
Chromosome19 (Build37)
Map Location 9,665,817 - 9,666,400
singlet/doubletsinglet
Overlap geneStxbp3b
Upstream geneSlc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152
Downstream geneLOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476D04.T7 (MSMg01no476_d04.b1)MSMg01-476D04.TJ (MSMg01no476_d04.g1)
ACCAG557846AG557847
length740741
length of high quality
(start - end)
617 (50 - 666)580 (80 - 659)
definitionCHROMAT_FILE: MSMg01no476_d04.b1 PHD_FILE: MSMg01no476_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:14 2005CHROMAT_FILE: MSMg01no476_d04.g1 PHD_FILE: MSMg01no476_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGTCTCACGGAAAAGACCAAACCTAAGAATAATAGGTAC
AGAAGAGAGCAAAGGCTCCCAACTCAAAGGGCCAGCAAACATCTTCAACA
AATTTATAGAAGAAAACTTCTCTAACTTAAAGAAAGAGGAACCCATAAAA
ATATAAGAAGCTTAGAGAATACCAAACAGATTGTACCAGAAAAGAAATTC
CTCCTATCACACAATAATCAAAACAACAAATACACATAACAAAGAAAGAA
TATTAAAAGGAGTAAGGAGAAAAGGTCAAGTAACATATTAAGGGAGACCT
ATCAGAATTAAACCAGACTTCTCAACAGTGACTCTAAATGCCAGAGTATC
TTGGACAGATGTCATAAGACTGTAAAAGAACAAAAATGCCAGCCCAGGCT
ACTATTCACAGCTAAACTCTCAATTACTATAGAGGGAGAAACCAAAATGT
TCCATGACAAAACCAAATTTAAACAATATCTTCCCACCAATACTCCCCTA
GAGAGGACAATAGAAGGAAAGCTCCAACACAAGGAGGAAAACTACTCTCA
AGAAAAAGCAAGAAACTAATCTCACAACAAGCCCAATAGTAGAGAACCAA
AAAACCATAATTACACCACTAACAACAAAATGAACAGGAAGCAACAATCA
TGGGTCCTTGATATCTCTTAACATCAATGTACTCAATTAT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGACCTCACAGAGCAAG
GGACTGTAGAACAATAATTGTTGGCTCTCTGTTTTTGTCTTCATCCATGA
TTCCCAAAGCTTCTATAGTTTGCTGAAATTCCCTTTCTAGCATTAAAACT
TTGAGGTTTGACTGTATCTTCAGTAGCATTCTAATGAGACTTGGTTAGTT
TTTTAATAGTATTTTTTCATCATCCAATTTGACATGAATAACAAAATTAG
AATTTTATAAGTGACAGAAAAAGTTTATAGTAAAAGATAAGCCTGCTTAT
GTTCAGAGAGATGACATTTTGAAATTGAAAGAACTAGGTCATGGCATCAG
GTACAGTTCCAGGTAAAAAGCTAAAGTTACAGGAGTTGATCAATTTAATA
CACAAAAAAGCATATCTTGGAACCTGGTAAAAAGGTTTGATTTTTCACCA
CAATGCTCAGATTCACTTCCAGGGAGAGTGACAGGACAAACTGAAACCCA
CTTTATGAATTCTAAAGATGTATGATGAATGTTCATGTAGAACTAAAGAA
GTCCACTTTCATAATCTAAACTCCTCATTGCCTTTGTCTCCTGAGAGGTT
CTGCCAGTGCCTGACACAGAAGTAGATGCTCACAGCCATCCATTGGACAG
AACACAGGGTCCCCTATGAAGGTGCTATAAAAAGTACCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_d04.g1 MSMg01no476_d04.g1 CHROMAT_FILE:
MSMg01no476_d04.g1 PHD_FILE: MSMg01no476_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:14 2005
         (580 letters)



>mm_chr19_9665624_9666600
          Length = 977

 Score =  849 bits (439), Expect = 0.0
 Identities = 548/593 (92%), Gaps = 23/593 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaaagacctcacagagcaagggactgtagaacaataattgttggctct--------ctgt 53
           |||||||||||||||||||||||||||||| |||| ||||||||||||        ||||
Sbjct: 194 aaaagacctcacagagcaagggactgtagagcaatgattgttggctctttgtgtttctgt 253

                                                                       
Query: 54  ttttgtcttcatccatgattcccaaagcttctatagtttgctgaaattccctttctagca 113
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 254 ttttgtcttcatccatgattcccaaagcttctatagtttgctgaaattc--tttctagca 311

                                                                       
Query: 114 ttaaaactttgaggtttgactgtatcttcagtagcattctaatgagacttggttagtttt 173
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 312 ttaaaactttgaggtttgactgtattttcagtagcattttaatgagacttggttagtttt 371

                                                                       
Query: 174 ttaatagtatttttt-catcatccaatttgacatgaataacaaaattagaattttataag 232
           |||| | |||||||| ||| |||||||||||||||||||||| ||||||||||||| |||
Sbjct: 372 ttaaaaatatttttttcattatccaatttgacatgaataacagaattagaattttacaag 431

                                                                       
Query: 233 tgacagaaaaagtttatagtaaaag--a-taagcctgcttatgttcagagagatgacatt 289
           |||||| ||||||  |    |||||  | || |||||||| |||||||||||||||||||
Sbjct: 432 tgacaggaaaagt--a----aaaagtgagta-gcctgcttgtgttcagagagatgacatt 484

                                                                       
Query: 290 ttgaaattgaaagaactaggtcatggcatcaggtacagttccaggtaaaaa-gctaaagt 348
           ||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 485 ttgaaattgaaagaattatgtcatggcatcaggtacagttccaggtaaaaaagctaaagt 544

                                                                       
Query: 349 tacaggagttgatcaatttaatacacaaaaaagcatatcttggaacctggtaaaaaggtt 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tacaggagttgatcaatttaatacacaaaaaagcatatcttggaacctggtaaaaaggtt 604

                                                                       
Query: 409 tgatttttcaccacaatgctcagattcacttccagggagagtgaca-ggacaaactgaaa 467
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 605 tgatttttcaccacaatgctcagatacacttccagggagagtgacaaggacaaactgaaa 664

                                                                       
Query: 468 cccactttatgaattctaaagatgtatgatgaatgttcatgtagaactaaagaagtccac 527
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 665 cccactttatgaattctaaagatgtatgatgaatgttcatgtagagctaaagaagtcaac 724

                                                                
Query: 528 tttcataatctaaactcctcattgcctttgtctcctgagaggttctgccagtg 580
           |||||||||||||  | | ||||||||||||||||||||||| ||||| ||||
Sbjct: 725 tttcataatctaagtttcacattgcctttgtctcctgagaggctctgctagtg 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 977
Length adjustment: 10
Effective length of query: 570
Effective length of database: 967
Effective search space:   551190
Effective search space used:   551190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)