Query= MSMg01no476_j23.b1 MSMg01no476_j23.b1 CHROMAT_FILE:
MSMg01no476_j23.b1 PHD_FILE: MSMg01no476_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:47 2005
(297 letters)
>mm_chr19_31754667_31755362
Length = 696
Score = 520 bits (269), Expect = e-152
Identities = 289/303 (95%), Gaps = 13/303 (4%)
Strand = Plus / Plus
Query: 1 cttaggaattctaatatcttatagaatcttgtctctaagagaccaatctgagcacaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaggaattctaatatcttatagaatcttgtctctaagagaccaatctgagcacaagct 260
Query: 61 tttaaggctttatcacttgaatctcacatgttgctgtaaatgacatttaaaatactaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaggctttatcacttgaatctcacatgttgctgtaaatgacatttaaaatactaatc 320
Query: 121 tgtatatttgccttaatgtatttcagtgtttgacttgcaagtggaagaaactcctgggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatatttgccttaatgtatttcagtgtttgacttgcaagtggaagaaactcctgggtc 380
Query: 181 actgaaaaaactttagagataatacacagttggatgtaaagactgtcttggtatcatatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgaaaaaactttagagataatacacagttggatgtaaagactgtcttggtatcatatc 440
Query: 241 ctttacctcg------tttttttttttgactgaagcagttctcggtgtgtatattctttc 294
|||||||||| |||| |||||||||||||||||||||| ||||||||||
Sbjct: 441 ctttacctcggggagctttt-------gactgaagcagttctcggtgtgcatattctttc 493
Query: 295 taa 297
|||
Sbjct: 494 taa 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 696
Length adjustment: 9
Effective length of query: 288
Effective length of database: 687
Effective search space: 197856
Effective search space used: 197856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_j23.g1 MSMg01no476_j23.g1 CHROMAT_FILE:
MSMg01no476_j23.g1 PHD_FILE: MSMg01no476_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:47 2005
(284 letters)
>mm_chr19_31969106_31969789
Length = 684
Score = 526 bits (272), Expect = e-154
Identities = 281/284 (98%)
Strand = Plus / Minus
Query: 1 tcttccaccctgatgtgtttaggcaagaaccggaaagttgaagctacgaaattatacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcttccaccctgatgtgtttaggcaagaaccggaaagttgaagctacgaaattatacttg 425
Query: 61 actgaaatcttagcattttcacaagaaacctttttttcacttgaatgctcctaaaatatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 actgaaatcttagcattttcacaagaaacctttttttcacttgaatgctcctaaaatatc 365
Query: 121 attaggcttcccctgccctaaattctatcttgcacatggtctgtccacactgagaataaa 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 364 attaggcttcccctgccctaaattctatcttgcacgtggtctgtccacactgagaataaa 305
Query: 181 gttaaactgaaactctacgctgtaggatctccctcttgagttttgcttgttgaaggctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttaaactgaaactctacgctgtaggatctccctcttgagttttgcttgttgaaggctct 245
Query: 241 ggctatttattttttcatttccttactttctttgacttaggtct 284
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 244 ggctatttatttaatcatttccttactttctttgacttaggtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
