BAC Information

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BAC

Clone NameMSMg01-476M16
Chromosome19 (Build37)
Map Location 12,513,074 - 12,513,309
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl
Downstream geneMpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476M16.T7 (MSMg01no476_m16.b1)MSMg01-476M16.TJ (MSMg01no476_m16.g1)
ACCAG558298AG558299
length760757
length of high quality
(start - end)
244 (69 - 312)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no476_m16.b1 PHD_FILE: MSMg01no476_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:01 2005CHROMAT_FILE: MSMg01no476_m16.g1 PHD_FILE: MSMg01no476_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCATTTACTCATGTACCCCCATTTGTTTAATAAGGTTATTTGGTTC
TCTGGAGTCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTC
TATTGGATTTAGGGTTGGTAAAGATCTTATCCCAATCTGTTGGTTCCCAT
TTTGTCCTATTGACAGTGTCCTTTGCTTTACAGAAGCTTTGAAATTTTAT
GATGTCCTATTTGTCAATGCTTGATATTACAGCATAAGCTATTGGTGTTC
TGTTCAGGAAAATCTTCCTTGTGCCCATGTACTCGAGTCTCTTCCCCACT
TTCTCTTCTATTAGTTTCTGTGTATCTGGTTTTATGTGGAGGTCCTTGAT
CCACTTGTACTTGAGCTTTGTACAAGGAGCTAGGAATGGATCAATTTGAA
TTCTTCTATATACTAACCACCAGTTGAGCGAGCACCATTTGTTGAAAATG
CTGTCTTTTTCCTGCTGGATGCGTTTTTTTAGCACCCTTGCCACACATTA
TATGACCATAGGTGTGTGGTTTCATTTCTTGGTCTTCCTATCCATCTCCT
TGATCCTACCTGTCGTCACTGCATCTCTAATCTGCCGTCTGTCTTTTTTT
TTTTTTCCCTTTTTCCCCCCTTTTTTTTTTTTCCCCTTGTTTTTCTCCCC
CCTCCTTTTCCCCCTTCATTTTTCCTTTCCTTTTGCCCCTTTTCCTTTTT
TCCTTCCTTG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCTAGACTTCCTTTTGATTGGAACA
GACAAATTTTTCCTGAAAAGGACCGACCTTCTTGTAAGTATTTTAGGCTT
TGCCAGTGAATTGCCTCTTCTGGTTTTTGTTTGTTTGTTTGTTTGTTTGT
TTTTTGTATAAAGATAGATGAAGAGTAAACACAGTCATGACTGTGCTCTA
TTAAGTTATTACTTACAAAAATGGGTTAGAATGGACTTGCCTTGGGACCT
GTTGCTTACTGATTTCCTTCNATTGATACTGGGATTATAAAATGTCTCGA
TTTAAATTTTTAAAAAATGCTCACCCTCACTCCCTTATCATGAGGAAATA
AAATGAGCAGAGGTCTCATTCATCCCCATGAGAAGATTATTAAAAAAGAC
CAATAAATGTTGACAAGGACTCAGAGAAATGGAGACTCTTAAGCACTATT
GATGAGAATGGAAGTTAGCATAGACTTATGAAATATGGTATGGACATTTC
TCGAGTATCTCAAAGTAAAACTCTCTTATCCCCCTATATCCCACACATCT
TCCACCATCCCAGTTATTTTCATTTCTCCCAGGAAACGACACCCTTATTT
TTTTTTTTTTCTTGCATCCCCATGTTTGTTTCCACACTTTCCTTCCTAGC
TCTATTTTGCCACACCCTTGCATGTTTTTCCCCCTCCGTCATGTTAATTT
CTCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_m16.g1 MSMg01no476_m16.g1 CHROMAT_FILE:
MSMg01no476_m16.g1 PHD_FILE: MSMg01no476_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:01 2005
         (244 letters)



>mm_chr19_12512740_12513383
          Length = 644

 Score =  395 bits (204), Expect = e-114
 Identities = 230/240 (95%), Gaps = 4/240 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctagacttccttttgattggaacagacaaatttttcctgaaaaggaccgaccttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 attctagacttccttttgattggaacagacaaatttttcctgaaaaggaccgaccttctt 511

                                                                       
Query: 61  gtaagtattttaggctttgccagtgaattgcctcttctggtttttgtttgtttgtttgtt 120
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 510 gtaagtattttaggctttgccagtgaattgcctcttctgatttttgtttgtttgtttggt 451

                                                                       
Query: 121 tgtttgttttttgtataaagatagatgaagagtaaacacagtcatgactgtgctctatta 180
           ||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tg---gttttt-gtataaagatagatgaagagtaaacacagtcatgactgtgctctatta 395

                                                                       
Query: 181 agttattacttacaaaaatgggttagaatggacttgccttgggacctgttgcttactgat 240
           ||||||||||||  ||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 394 agttattacttatgaaaatgggttagaatggacttgcctcgggatctgttgcttactgat 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)