Query= MSMg01no477_j03.b1 MSMg01no477_j03.b1 CHROMAT_FILE:
MSMg01no477_j03.b1 PHD_FILE: MSMg01no477_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:03 2005
(686 letters)
>mm_chr19_9153703_9154788
Length = 1086
Score = 1189 bits (615), Expect = 0.0
Identities = 668/697 (95%), Gaps = 19/697 (2%)
Strand = Plus / Plus
Query: 9 gaattcagggttaaactggactcagagactgaaatggaaacctaaggttagaaggccagg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaattcagggttaaactggactcagagactgaaatggaaacctaaggttagaaggccagg 249
Query: 69 agaattcagcaccccacagttctttctcctcccccaagacctatctactcctcaccccta 128
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 250 agaattcagcaccccacagttctttctcctcccctaagacctatctactcctcaccccta 309
Query: 129 tttctttcagggtgcccctgaccacatttctgtcctaccattgacagactatctgctttc 188
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 310 tttctttcagggtgcccctgaccacatttctgtcctactgttgacagagtatctgctttc 369
Query: 189 ctgataggactcctctagaaggactcccccaccccgggaagtgccgcagtgggatgatgc 248
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 370 ctgataggactcctctagaaggactcccccaccccgggaagtgccgcagtgcgatgatgc 429
Query: 249 tttgtagtcta-----tg--------------gcacagagcttcaggtactccgtaaaag 289
||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 430 tttgtagtctacagggtgcttgcatgctaccggcacagagcttcaggtactccgtaaaag 489
Query: 290 tcttagcaaggcttgtgtgctgggctgggcacctgtttcctggccagggaaacgaatcca 349
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 490 tcttagcaaggcttgtgtgctgggctgggcacctgtttcctggccagggaaatgaatcca 549
Query: 350 aagtctttagctccagtttatcaattctgaagctggctactgtgcttgcttagttgaatc 409
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 550 aagtctctagctccagtttatcgattctgaagctggctactgtgcttgcttagttgaatc 609
Query: 410 tagctaccgatgactctagtctcacattctcataagcctgttgatctattcagtaagccc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tagctaccgatgactctagtctcacattctcataagcctgttgatctattcagtaagccc 669
Query: 470 ttgggaggaccgtcccctaattacaggtttcagagtacatcgtttgcctggccctctcat 529
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 670 ttgggaggaccgtcccctaattacaggtttcagagtacattgtttgcctggccctctcat 729
Query: 530 catcagtcaaggcttctttttatcatcatctgcttgaagctctttggagcaactgatcac 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 catcagtcaaggcttctttttatcatcatctgcttgaagctctttggagcaactgatcac 789
Query: 590 gcagaggtgaattactacccacagctgccttggtattcacacacagcaggcctggtgtca 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gcagaggtgaattactacccacagctgccttggtattcacacacagcaggcctggtgtca 849
Query: 650 gctgcaaaggggagagcatcttatccccttcatcttg 686
|||||||| ||||||||||||||||||||||||||||
Sbjct: 850 gctgcaaacgggagagcatcttatccccttcatcttg 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_j03.g1 MSMg01no477_j03.g1 CHROMAT_FILE:
MSMg01no477_j03.g1 PHD_FILE: MSMg01no477_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:03 2005
(612 letters)
>mm_chr19_9321447_9322459
Length = 1013
Score = 934 bits (483), Expect = 0.0
Identities = 501/507 (98%), Gaps = 1/507 (0%)
Strand = Plus / Minus
Query: 1 catgctgtaggagagaataaaagttgtgacaggagagaattgtgtgtccattgaggtatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 catgctgtaggagagaataaaagttgtgacaggagagaattgtgtgtccattgaggtatc 448
Query: 61 catgattttagagacagtcacatgaacagtttttggcaagtgaaagtacttaccaatact 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catgattttagagacagtcacgtgaacagtttttggcaagtgaaagtacttaccaatact 388
Query: 121 taatagaaagaaaaatcatgaaagacattgactcaagtgactaggatcattacag-aaaa 179
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 387 taatagaaagaaaaaacatgaaagacattgactcaagtgacttggatcattacagaaaaa 328
Query: 180 aaaaaaaaactacacaagaacaggcactttccaattgatttttttaatttaattttccta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaaaaaaactacacaagaacaggcactttccaattgatttttttaatttaattttccta 268
Query: 240 acaacttttgtttatttatttatacattaactttacttccagtccctctatcccacatct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acaacttttgtttatttatttatacattaactttacttccagtccctctatcccacatct 208
Query: 300 cctcttacagaaaccatctaggagagcaagccagtgagtttcctggagttgtcttaccat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cctcttacagaaaccatctaggagagcaagccagtgagtttcctggagttgtcttaccat 148
Query: 360 tttgcttgactatgatgggagcactctggagaggcacagacccagagacttcatcccagg 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tttgcttgactatgatgggtgcactctggagaggcacagacccagagacttcatcccagg 88
Query: 420 gtggcttcttgcagctgatatgcctttcctgccagttttacatagcctaatgattattgg 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 gtggcttcttgcagttgatatgcctttcctgccagttttacatagcctaatgattattgg 28
Query: 480 gcccaccctactgcacagatttcctgc 506
|||||||||||||||||||||||||||
Sbjct: 27 gcccaccctactgcacagatttcctgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
