BAC Information

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BAC

Clone NameMSMg01-478C22
Chromosome19 (Build37)
Map Location 59,141,421 - 59,141,777
singlet/doubletsinglet
Overlap gene4930506M07Rik
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik
Downstream geneLOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478C22.T7 (MSMg01no478_c22.b1)MSMg01-478C22.TJ (MSMg01no478_c22.g1)
ACCAG559358AG559359
length740739
length of high quality
(start - end)		359 (60 - 418)660 (65 - 724)
definitionCHROMAT_FILE: MSMg01no478_c22.b1 PHD_FILE: MSMg01no478_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:50 2005CHROMAT_FILE: MSMg01no478_c22.g1 PHD_FILE: MSMg01no478_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATG
ATTCCTACAAGAAACCCCTGCTGCTGGAGAGCTAGGACCCAGACAGGAAG
ATCTAGGCTGTGTTTGCCCATGTGCTTGGTTTGTACAGGTTTGAGTTTAA
AAGGCCCTGGGGGTGGGGAGGTGGAAGGACAGGTTAGTAGGGAAAGGATA
TTTTATTTCAAGTTCTAGACTGCTAAGAGGCTCCTGATATTTCCAGTGGA
TGACGAAACATAGCCAGCCACTCTACGAAGGCTGCCTACAGAGTCTTCCT
GGGTTTTGTTTGTTTGTTTTTTGCTTTTGGTTTTGTGGTACACATATGTG
TGCATGTGTGTGCGTGCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTTTGTTTTGATGNNTGGNNTTTTNNTATTTTGTTTTGTNTGT
CCTGGAGTTCACTATGTTGATCAGGNTGTTCTCATACTTATTTAGTTATC
TGCCTGTCTCTGGCTCCCCATCCTGTGATTAAAGGTATGGTTTTCATGCC
CAGCTTGTCACTCTATCCTTAAGAACTGCTCCTCTTAGATTCTACTTTAC
CTTACTATTCTTGTTTTTGGTAATGTCCTTTATCTCCTTGTCTTTTTTTT
TTCCTTGAGGTTATTGTTTTGTGTGCTTGTTTCTTATTTCATCCGTAATT
CTTGTCTCTCTTCTCTCTGGGCTTGTCATTATTTTCCATT

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCATCCCTGGATGAAATAGTCAAGATACTCCTCATTG
ACCTATGGTAAACTTTGCAGGAAGTATTTCTCATCTTCATAGCAACCATG
GGAAGTAACATTAGTAACATTAGTACTCAGAGAAGTAACATTAGTACTCA
GAGAAGTAACATTAGTAACATTAGTACTCAGAGAAGTAACATTAGTACTC
AGAGAAGTAACATTAGTAACATTAGTACTCAGAGAAGTAACATTAGTAAC
ATTAGTACTCAGAGAAGTAACATTAGTACTCAGAGAAGTAACATTAGTAC
TCAGAGAAGTAACATTAGTAACATTAGTACTCAGAGAAGTAACATTAGTA
CTCAGAGAAGTAACATTAGTACTCAGAGAAGTAACATTAGTACTCAGAGA
AGCAGACAAATACCATCCCCAAGTCAACCAGTTAAGTGAGAGAATCCAAG
CCTCCAGCTTAAGTTCTATAAAAACCAAGGGATCCTCCAGGAATCCGGGT
GCAGATGAAGCTTTAGTGAATTCGGTAGACATCCTTGATGCTCAGGCATA
CCAGTCTTGGTTCTGAGGTTGTGTTGTTAGTGTTTCAGCTATCTCTGGGG
AAGGACACGAACAAGTATCTACTTACCCAAGACAAGATAGGGAACTNCAG
ACAGACTGAAATATGGATCCCACCAAAGTTCAAACTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_c22.b1 MSMg01no478_c22.b1 CHROMAT_FILE:
MSMg01no478_c22.b1 PHD_FILE: MSMg01no478_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:50 2005
         (359 letters)



>mm_chr19_59141221_59141979
          Length = 759

 Score =  675 bits (349), Expect = 0.0
 Identities = 356/359 (99%), Gaps = 2/359 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaacccctgctgctggagagctaggacccagacaggaagatctaggctgtgtttgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaacccctgctgctggagagctaggacccagacaggaagatctaggctgtgtttgccc 260

                                                                       
Query: 61  atgtgcttggtttgtacaggtttgagtttaaaaggccctgggggtggggaggtggaagga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 atgtgcttggtttgtacaggtttgagtttaaaaggccctgggggtggggaggtggaagaa 320

                                                                       
Query: 121 caggttagtagggaaaggatattttatttcaagttctagactgctaagaggctcctgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggttagtagggaaaggatattttatttcaagttctagactgctaagaggctcctgata 380

                                                                       
Query: 181 tttccagtggatgacgaaacatagccagccactctacgaaggctgcctacagagtcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccagtggatgacgaaacatagccagccactctacgaaggctgcctacagagtcttcc 440

                                                                       
Query: 241 tgggttttgtttgtttgttttttgcttttggttttgtggtacacatatgtgtgcatgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggttttgtttgtttgttttttgcttttggttttgtggtacacatatgtgtgcatgtgt 500

                                                                      
Query: 301 gtgcgtgcgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttttga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 501 gtgcgtgcgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--gttttga 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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