Query= MSMg01no478_f02.b1 MSMg01no478_f02.b1 CHROMAT_FILE:
MSMg01no478_f02.b1 PHD_FILE: MSMg01no478_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:01 2005
(670 letters)
>mm_chr19_35354795_35355864
Length = 1070
Score = 592 bits (306), Expect = e-173
Identities = 324/330 (98%)
Strand = Plus / Minus
Query: 6 aattctttatttacgatctttatgataatgtgtttatagcataaggtttggctcatctgc 65
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aattctttattgatgatctttatgataatgtgtttatagcataaggtttggctcatctgc 271
Query: 66 taagcaaaatagtaattgtgaccaacatgttataacaatcttagttccctatgtaaaact 125
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 taggcaaaatggtaattgtgaccaacatgttataacaatcttagttccctatgtaaaact 211
Query: 126 tactgtgtttttaaacaaaatctcagtcattcaattttaccaatgaagactcaggagcca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tactgtgtttttaaacaaaatctcagtcattcaattttaccaatgaagactcaggagcca 151
Query: 186 gatgcaggggtgaaagcctgctaactcaaagaggcaaagtaaccagatgactttcctcca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gatgcaggggtgaaagcctgctaactcaaagaggcaaagtaaccagatgactttcctcca 91
Query: 246 caaccaactttacaaaaggaagtcctccttctccacactatctccaaaacccctcaaact 305
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 90 caaccaactttacaaaaggaagtcctccatctccacactatctccaaaacccctcaaact 31
Query: 306 gagcgcccctcccttctctttcctgtgtgt 335
||| ||||||||||||||||||||||||||
Sbjct: 30 gagagcccctcccttctctttcctgtgtgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_f02.g1 MSMg01no478_f02.g1 CHROMAT_FILE:
MSMg01no478_f02.g1 PHD_FILE: MSMg01no478_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:01 2005
(612 letters)
>mm_chr19_35257978_35258997
Length = 1020
Score = 1060 bits (548), Expect = 0.0
Identities = 602/628 (95%), Gaps = 17/628 (2%)
Strand = Plus / Plus
Query: 1 tctgtgtagtccaggttagcctctcaaaaagagtgtcaatcttcttccctcagctaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgtagtccaggttagcctctcaaaaagagtgtcaatcttcttccctcagctaagtg 260
Query: 61 ctgggatatccagtgtgcaccactacacttggtcttctgtgttgttgaagcatatctcct 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggatatccagtgtgcaccactacatttggtcttctgtgttgttgaagcatatctcct 320
Query: 121 cctactgtc---ctttcttttgacatagtgtttcacaatggaagtgaggctggcttgaac 177
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cctactgtccttctttcttttgacatagtgtttcataatggaagtgaggctggcttgaac 380
Query: 178 ttatcaaatagcccatgttagcttctaaaactagtaacaatcctatctccacttctaagt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatcaaatagcccatgttagcttctaaaactagtaacaatcctatctccacttctaagt 440
Query: 238 cctggattgtagatattgagaattcctgacatttctctgggttttaggatctgaactcca 297
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 cctggattgtagatattgagaattcctgacatttctatgggttttaggatctgaactcca 500
Query: 298 gccaccttgattgcatagtaaattacttaatgcagagctgtttcccacaccc-c----ac 352
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 501 gccaccttgattgcatagtaaatgccttaatgcagagctgtttcccacacccacttctac 560
Query: 353 ttcctgtaattttgacaagccagtttagccctccttaagaatttaaaagccctatttata 412
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcctgcaattttgacaagccagtttagccctccttaagaatttaaaagccctatttata 620
Query: 413 ataggcagaagctggaaagaacccagatgtccctcaacagaggaatgaatacagaaaatg 472
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 atagccagaagctggaaagaacccagatgtccctca-cagaggaatgaatacagaaaatg 679
Query: 473 tggtacatctacacaatggagtactactcagctattaaaatcaatgaatttatgaaattc 532
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 tggtacatttacacaatggagtattactcagctattaaaatcaatgaatttatgaaattc 739
Query: 533 ttggacaaat--------ctggaggatatcatcctgagtgaggtaaccaaatcacaaaag 584
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttggacaaatggatgtatctggaggatatcatcctgagtgaggtaaccaaatcacaaaag 799
Query: 585 aagtcacttgatatgcactctctgataa 612
||||||||||||||||||||||||||||
Sbjct: 800 aagtcacttgatatgcactctctgataa 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1020
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1010
Effective search space: 608020
Effective search space used: 608020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
