Query= MSMg01no478_h24.b1 MSMg01no478_h24.b1 CHROMAT_FILE:
MSMg01no478_h24.b1 PHD_FILE: MSMg01no478_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:14 2005
(325 letters)
>mm_chr19_42508324_42509048
Length = 725
Score = 613 bits (317), Expect = e-180
Identities = 323/325 (99%)
Strand = Plus / Minus
Query: 1 acctctctgaattctaaaacaccctgccttcaattgtttctagacacaggcaacattagg 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 525 acctctctgaattctaaaacaccctgccttcaagggtttctagacacaggcaacattagg 466
Query: 61 agaattagaaattctaggaccagatctgcccatcccatcccatcccttatccctcgaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agaattagaaattctaggaccagatctgcccatcccatcccatcccttatccctcgaagg 406
Query: 121 actccctgagtggaacacctgtcactttacatttcactgtcctttcctggcaccttggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 actccctgagtggaacacctgtcactttacatttcactgtcctttcctggcaccttggct 346
Query: 181 ctgtcatccccttccctgactagagagagtgagatcattgcagggttgttttgcaccgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctgtcatccccttccctgactagagagagtgagatcattgcagggttgttttgcaccgac 286
Query: 241 aacctattcacatctgggtggctaatgttgataattactgagctggttactaaatctgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aacctattcacatctgggtggctaatgttgataattactgagctggttactaaatctgtc 226
Query: 301 aggtttaggtgaggtgagtctcggc 325
|||||||||||||||||||||||||
Sbjct: 225 aggtttaggtgaggtgagtctcggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_h24.g1 MSMg01no478_h24.g1 CHROMAT_FILE:
MSMg01no478_h24.g1 PHD_FILE: MSMg01no478_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:14 2005
(647 letters)
>mm_chr19_42366481_42367527
Length = 1047
Score = 1176 bits (608), Expect = 0.0
Identities = 638/648 (98%), Gaps = 2/648 (0%)
Strand = Plus / Plus
Query: 1 ggagtgaggaccatcagggaacggggttgcttaggttgggccagaactgtgtgcccactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagtgaggaccatcagggaacggggttgcttaggttgggccagaactgtgtgcccactg 260
Query: 61 tctggagggcctcttgcagcgctccccttccagat-ctggcccctggacacagcctcacc 119
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 261 tctggagggcctcttgcagcgctccccttccagatccgggcccctggacacagcctcacc 320
Query: 120 ctctactcaagttctcaggcatccggaaaaccccagggcaggcatttctcacccccaact 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctactcaagttctcaggcatcc-gaaaaccccagggcaggcatttctcacccccaact 379
Query: 180 gctcagaactggaaacaatctagctgtccatcaacaggggacttggtaataagttatgaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctcagaactggaaacaatctagctgtccatcaacaggggacttggtaataagttatgaa 439
Query: 240 tgctgtttcacagtgcgatactccgtggagctggtggaaaataaaagacgtgcacagtgg 299
||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 440 tgctgccacacagtgcgatactctgtggagctggaggaaaataaaagacgtgcacagtgg 499
Query: 300 tggagggacagccaggctttcactgttcagggcagtaaaaaaagcaagcttgccattttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggagggacagccaggctttcactgttcagggcagtaaaaaaagcaagcttgccattttt 559
Query: 360 cattctttaaaaaaaacaaaacaaaacaacaaaccaaccccaaacctaagtagtatgtat 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cattctttaaaaaaaccaaaacaaaacaacaaaccaaccccaaacctaagtagtatgtat 619
Query: 420 atttatatatgtgcccctgtgtgcattgcatgggagaatggcttatttgaagcgtggcct 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atttatatacgtgcccctgtgtgcattgcatgggagaatggcttatttgaagcgtggcct 679
Query: 480 catatttgaaaattgctgttgtcccttctcccgcctgctcctaacttccttttctgcttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catatttgaaaattgctgttgtcccttctcccgcctgctcctaacttccttttctgcttg 739
Query: 540 gcattttctttctttgtagcacttaatgcaatcttaacatggtctatttcacctacttat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcattttctttctttgtagcacttaatgcaatcttaacatggtctatttcacctacttat 799
Query: 600 tctgttcaccatgtattccgtgcttttcatctctcactagcatacagg 647
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tctgttcaccatgtattccgtgcttttcatctctcactagcatacagg 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
