BAC Information

Click to search

BAC

Clone NameMSMg01-478K02
Chromosome19 (Build37)
Map Location 26,293,620 - 26,294,161
singlet/doubletsinglet
Overlap gene1700048O14Rik
Upstream geneAnkrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478K02.T7 (MSMg01no478_k02.b1)MSMg01-478K02.TJ (MSMg01no478_k02.g1)
ACCAG559701AG559702
length731735
length of high quality
(start - end)
554 (57 - 610)619 (66 - 684)
definitionCHROMAT_FILE: MSMg01no478_k02.b1 PHD_FILE: MSMg01no478_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:23 2005CHROMAT_FILE: MSMg01no478_k02.g1 PHD_FILE: MSMg01no478_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAG
TTACACCAACAGAGCTACCTGACCTGGACCCTTGTGTCTCTCAGAGACTG
GACCACCAACCAAAGAGCATACATAGGCTGGAACTAAGCCTCCCTGCACA
CATGTAGCAGATGTGCAGCTTGGTCTTCATGTGGGTCCTGAACAACTGAA
GCAGGAGCTATCCCAAAAGCTGTTGCTTTGTCTGTGGGATATGTTCTTCT
ATCTGGGCTGCCTTGTCTCGCCTCAGTGGGAGAGGATGGCTTAGACCCAT
AGAGACTTTATGTGCCAGGGTGGGAGGGTACCCAGAAGGGCCCCACCTTC
TCAGAGGAGAAGAGGATGGGAATGGGGATAGGGGAGGACTGTGGGAGAGG
GTGACCACNAGGGGGCAATGAAAGGCATATAAAGTGAATAAAACAAACAA
ACAAACAAACAAACAAACAAACAAACACAAAGGGAACATGAACTTAGTGG
GGATAACAGGAACCTCTGTTCCCATGTTAATTGTGTGGCTTTGGGAAGCC
ACTCAGGCTCTGTGGGACTATTTGCTATCAGGAAAACATGAATAACAGTT
AATTGTTCTAATAATCAAGCAGGTAAGTAATTGAATGATACTAGCTCATA
TTTGTTGGAAATCTACTGTGTTGGGCGGGCTTTTCAATGATTTAGCTTAC
TGCTTCATGGCTACTAATAATAATTTCTATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTGTCTCGAAGAATTCAATGCAATGGATTTAATTGGGCCCCGAAGTAGCA
GGTGCCAGGTGGCAACACTGAATTGCTAAAGGCAAGGTGAGTGTAGCTGC
CATAATGGGCAGCACAGACAAGTCAATGCCCATAAAGACCTGGCCCATGA
TGGTCAGCAGAGGCAAAGTGAATTTTATGTTGGCATGCTGTATATGAATC
TTTGGAACTGACTAATCAATCATGATGTTTCTAGGCATAAGTAGATAAGA
AGCCTATTGTTTTTTTGTTTGATCTGTATAAGGAGAAAAATTCTCAAACA
AATGAAAGGAAAGCTACATTGGATTGTGGCAAAAGGGAGTCTTGGCCCAT
GAACCAGACTTGAGCCAGTTTGCAGACCCAGAATGACTTGAACGAAGGGA
TAGCTAAGTTCCCCTGAGGAAGGACTTTGATTTTATACACACACACACAC
ACACACACACACACACACACACACACACACACACACACATATGAGTTTTA
CTGTTAGCCAGAGGGCCCTTCCTCAGTGGGACCTAAGGCCTTTTACGAGG
GCAATTGTGCATAGGGGAAAAAAGAAAACAATTAAACTTTCTGGGGTCTG
TTGGATACTGACTAAGTGGTGATACTGATTCTGGGAGAGCCCAAGAATTA
CTGTGACCCTCCAATTAAAGTAGCAGCTCATGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_k02.b1 MSMg01no478_k02.b1 CHROMAT_FILE:
MSMg01no478_k02.b1 PHD_FILE: MSMg01no478_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:23 2005
         (554 letters)



>mm_chr19_26293408_26294361
          Length = 954

 Score = 1007 bits (521), Expect = 0.0
 Identities = 540/554 (97%), Gaps = 12/554 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacagagctacctgacctggacccttgtgtctctcagagactggaccaccaaccaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 caacagagctacctgacctggacccttgtgtctctcagagactggaccaccaaccaaaga 272

                                                                       
Query: 61  gcatacataggctggaactaagcctccctgcacacatgtagcagatgtgcagcttggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gcatacataggctggaactaagcctccctgcacacatgtagcagatgtgcagcttggtct 332

                                                                       
Query: 121 tcatgtgggtcctgaacaactgaagcaggagctatcccaaaagctgttgctttgtctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcatgtgggtcctgaacaactgaagcaggagctatcccaaaagctgttgctttgtctgtg 392

                                                                       
Query: 181 ggatatgttcttctatctgggctgccttgtctcgcctcagtgggagaggatggcttagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggatatgttcttctatctgggctgccttgtctcgcctcagtgggagaggatggcttagac 452

                                                                       
Query: 241 ccatagagactttatgtgccagggtgggagggtacccagaagggccccaccttctcagag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccatagagacttgatgtgccagggtgggagggtacccagaagggccccaccttctcagag 512

                                                                       
Query: 301 gagaagaggatgggaatggggataggggaggactgtgggagagggtgaccacnagggggc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 513 gagaagaggatgggaatggggataggggaggactgtgggagagggtgaccacaagggggc 572

                                                                       
Query: 361 aatgaaaggcatataaagtgaataaaacaaacaaacaaacaaacaaacaaacaaacaaac 420
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 573 aatgaaaggcatataaagtgaataaaacaaacaaacaaacaaacaaaca----------- 621

                                                                       
Query: 421 acaaagggaacatgaacttagtggggataacaggaacctctgttcccatgttaattgtgt 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 -caaagggaacatgaacttagtggggataacaggaacctctgttcccatgttaattgtgt 680

                                                                       
Query: 481 ggctttgggaagccactcaggctctgtgggactatttgctatcaggaaaacatgaataac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctttgggaagccactcaggctctgtgggactatttgctatcaggaaaacatgaataac 740

                         
Query: 541 agttaattgttcta 554
           ||||||||||||||
Sbjct: 741 agttaattgttcta 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)