BAC Information

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BAC

Clone NameMSMg01-479N11
Chromosome19 (Build37)
Map Location 54,336,897 - 54,337,208
singlet/doubletsinglet
Overlap genenone
Upstream geneMxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479N11.T7 (MSMg01no479_n11.b1)MSMg01-479N11.TJ (MSMg01no479_n11.g1)
ACCAG560624AG560625
length737753
length of high quality
(start - end)
328 (325 - 652)412 (330 - 741)
definitionCHROMAT_FILE: MSMg01no479_n11.b1 PHD_FILE: MSMg01no479_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:58 2005CHROMAT_FILE: MSMg01no479_n11.g1 PHD_FILE: MSMg01no479_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGATCCGC
GGAAATCCTGATTTCCATCCCCCTCTCCTTGGATTCCCTTGAACAATTAA
TCCTCTTCATAATTGGGTTAATGTCACAGGGACCAAAAGAACACTAATGC
ATTTTGTCAAGTGGACAAAGGGCAGGTGAAGCTTTCTCCACATTGTCTTT
GGATTGCAGTGATTCACCTCAAATCCTTGTTTCTCCCTACAAAGTTCCAA
GGGAAACTTGTACAAGAAAAGTGTCAGTGATGGACAGGCCATACCTTGGA
TTCAGTATGAGGTTGATCTCTTATCATACAATCATCTCTAGATATTGTTC
CTGAACAAGTCTAGTGAATGTTTAAAAAGCACTACATCTTATTATTGTAT
CAGATAAAGATAGATTTTGAGTTCAGCGTCTGTACCCAATTTTCTCTTTT
CTAGATCTTCACCACCAATGTAGCCCGGAAACATCACAAGCCACAGAAAG
AGCAGTCTGAAAACTGTGTGTTGTGGACTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCATCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCT
TTCCCAATGTCACCTTAATATAATGTTTCCATATAATTTCCCTTTCACTC
ATGCTGCCAGAGTAGAACCTTAACCATTTGCCTCATTCCTGCCCCTTCCT
GAGGATGCTGATGAGCCTAGGATACTGAGTGCTACTT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXGGTTCAAATACAGTAGG
NGACACTATAGATTTACACAAACAATGTCATAACAACAAAAACAACAGAA
AACGCACATACTCATAGAAACTGACCAACTCTGTACTCAGTGATAACTTG
TTTGGGGAAGAAATAAAGAAAGAAATTAAAGACTTTCTAGAATTCAATTA
AAATGAAGACACAGCATACCCAAACTTATGGGATACAATGAAAGCAGCGA
TTTTTAGAAAATTCATATCACCTAAGTGCCTTCATAAAGAAATTGATCAG
ATCCTACACTAGCAACTTATCATCCATTATGAAAGCTCTAGAACAAAAAG
AAGCAAAATACCCTATAGGAGTAGAAGGCAAGAAATAATCAAATCGGGGG
GAAATCAACCAATTAGAAACAAAGAGCATGATACAGAGAATCAACAAAAC
TAAAAGCAGGTTCTTTGAGAAAATCAACAAGATAGATTAAACTCTAGCCA
AACTAACTAAAGGGCACAAAGACAGTACCCAAATCAACAAAATCAGAAAT
GAAAAGGGAGACATAACAACAGAAACTGAGGAAATTCAATAGTCACCGAA
TCTTACTACAAAAGTCTCTACTCAACAAAGCTGGAAAATCTAGATGAAAT
GAATGATTTTCTAGACAGACCAAAGTTAAATCAAGATCAGGTAAACTATC
TAAATAGTCCCATAACCCCTAAGGAAATAGAAGCAGTCATTTAAAAACAA
ACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_n11.b1 MSMg01no479_n11.b1 CHROMAT_FILE:
MSMg01no479_n11.b1 PHD_FILE: MSMg01no479_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:58 2005
         (328 letters)



>mm_chr19_54336697_54337424
          Length = 728

 Score =  484 bits (250), Expect = e-141
 Identities = 301/328 (91%), Gaps = 16/328 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacaatcatctctagatattgttcctgaacaagtctagtgaatgtttaaaaagcacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacaatcatctctagatattgttcctgaacaagtctagtgaatgtttaaaaagcacta 260

                                                                       
Query: 61  catcttattattgtatcagataaagatagattttgagttcagcgtctgtacccaattttc 120
           |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 catcttatcattgtagcagataaagatagattttgggttcagcgtctgtacccaattttc 320

                                                                       
Query: 121 tcttttctagatcttcaccaccaatgtagcccggaaacatcacaagccacagaaagagca 180
           ||||||||||||||||| ||| ||||||||| | |||||||||||| ||||| |||||||
Sbjct: 321 tcttttctagatcttcatcactaatgtagccagtaaacatcacaaggcacaggaagagca 380

                                                                       
Query: 181 gtctgaaaactgtgtgttgtggacttccttccttccttccttccttccttccttccttcc 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgaaaattgtgtgttgtggacttccttccttccttccttccttccttccttccttcc 440

                                                                       
Query: 241 atccttccttccttccttccttccttccttccttctttcccaatgtcaccttaatataat 300
                           ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ----------------ttccttccttccttccttctttccctatgtcaccttaatataat 484

                                       
Query: 301 gtttccatataatttccctttcactcat 328
           ||||||||||||||||||||||||||||
Sbjct: 485 gtttccatataatttccctttcactcat 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)