BAC Information

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BAC

Clone NameMSMg01-480B06
Chromosome19 (Build37)
Map Location 27,139,273 - 27,139,624
singlet/doubletsinglet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
Downstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480B06.T7 (MSMg01no480_b06.b1)MSMg01-480B06.TJ (MSMg01no480_b06.g1)
ACCAG560805AG560806
length744730
length of high quality
(start - end)
352 (73 - 424)567 (77 - 643)
definitionCHROMAT_FILE: MSMg01no480_b06.b1 PHD_FILE: MSMg01no480_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:17 2005CHROMAT_FILE: MSMg01no480_b06.g1 PHD_FILE: MSMg01no480_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCCACTCTTGTACAGCTCGCAGGTCTGCATACATCAGTCATATC
TGCTCACCTTGTTGCTTCACCTCTATAGTTTAAAATGTGTAGGACTGTGA
TTTGTTACCCAAAGAACCACTTTTGAATCAGTAGGTGTTTTTCCTCCAAG
TTGGTTAAGGTCTAGAAATAGCAGACTGCAAGACATTTTCAAAACAAAAT
ATTTCTTCCCTTTAGATAAGCGTATGAATGTGGAGAAAGAGCCTGGGAAT
TCTTGTGTTGGCAAAAGTGTGAGCGACTGTGGCTGCTGCTTTCTGTGGGC
CCCCACCCTGGAGCCAGTCCAGCCTTCGCTGCAGGGCTTTCTCTTTCANG
GTCCTAATAAAGGACCAGCATGGATGGGGATTCTTATCTACCTTCTCACT
TCATGGTTCCTGCACTTTCTTTACTAAGGTCCTCACTACCCAAAATAGAA
TCAGATTTTTTTTTTTAATTTGAAAGCCATTGTGTGTGTTATTTTGAAAA
TTTCATGGGAAAAGTAAAACGGGTGGTATGGTGGCTCCCCTTTTAATTAC
CCCCCCCCCTAAAGGGCATTTTTCCCTTTATGGGGGTAAAAAGGGAGGGG
CCAAGGGAGGGCCAAAAAAAAGGTTTTGGGGGTTTTTCTCCAAAAACCCC
AAAACTCTTTTTTGTGCCCCCAAAGGGGAAGGGGTTGGAAAAAT
ACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCAGAAATTCCACATAAAACCAGAGATACTGAAATTT
ATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGGGGAAAA
ATTCCTGAATAGAACAGCAATGGCTTGTGCTGTATGATCGAGAATCGACA
AATGGGACCTCATAAAATTACAAAGTTTCTGTAAGGCAAAAGACACCGTC
ATTAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCC
TAAATCAGATAGGGGACTAATATTTTTTATATATATAAAGAACTCAAGAA
GGTGGACTCCAAAAATCAAATAACCCCATTAAAAATGGGGTGCAGAGCTT
AACAAAGAATTCTCACCTGAGGAATATCGAATGGCTGAGAAGCACGTGAA
AAAAATGTTCAGTATCATTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGGCCAAAATCTCAGG
TGACAGCAGATGCTGGCAAGAATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAG
TTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAAATGTTCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_b06.b1 MSMg01no480_b06.b1 CHROMAT_FILE:
MSMg01no480_b06.b1 PHD_FILE: MSMg01no480_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:17 2005
         (352 letters)



>mm_chr19_27139073_27139824
          Length = 752

 Score =  605 bits (313), Expect = e-177
 Identities = 342/352 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgcaggtctgcatacatcagtcatatctgctcaccttgttgcttcacctctatagttta 60
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 552 tcgcaggtctgcatacatcagtcacatctgctcaccttgtttcttcacctctatagttta 493

                                                                       
Query: 61  aaatgtgtaggactgtgatttgttacccaaagaaccacttttgaatcagtaggtgttttt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aaatgcgtaggactgtgatttgttacccaaagaaccacttttgaatcagtaggtgttttt 433

                                                                       
Query: 121 cctccaagttggttaaggtctagaaatagcagactgcaagacattttcaaaacaaaatat 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 432 cctccaagttggttaaggtctagaaatagcagactgcaggacattttcaaaacaaaatat 373

                                                                       
Query: 181 ttcttccctttagataagcgtatgaatgtggagaaagagcctgggaattcttgtgttggc 240
           |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||
Sbjct: 372 ttcttccctttagataagcgtatgaatgtggagaaagagcctggaaatccttgtcttagc 313

                                                                       
Query: 241 aaaagtgtgagcgactgtggctgctgctttctgtgggcccccaccctggagccagtccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaaagtgtgagcgactgtggctgctgctttctgtgggcccccaccctggagccagtccag 253

                                                               
Query: 301 ccttcgctgcagggctttctctttcanggtcctaataaaggaccagcatgga 352
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 252 ccttcgctgcaggactttctctttcagggtcctaataaaggaccagcatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)