Query= MSMg01no481_a12.b1 MSMg01no481_a12.b1 CHROMAT_FILE:
MSMg01no481_a12.b1 PHD_FILE: MSMg01no481_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:31 2005
(663 letters)
>mm_chr19_14742294_14743357
Length = 1064
Score = 1180 bits (610), Expect = 0.0
Identities = 650/668 (97%), Gaps = 9/668 (1%)
Strand = Plus / Minus
Query: 5 gaattcgcacacagatttgcattatcgccgtca--------ctagcctcatctccttctg 56
|||||||||||||||| | ||||||||||||| ||||||||| |||||||||
Sbjct: 718 gaattcgcacacagatagggattatcgccgtcactcgccatctagcctcagctccttctg 659
Query: 57 gggacttaagccatccacatgatagtttaacacagagtgcattaggaactaaaaccattg 116
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 658 gggacttaagccatccacataatagattaacacagagtgcattaggaactaaaaccattg 599
Query: 117 cagctctgcagtcctgtaggcaagagtccgggttcaatctttatcaatatggaaaacaag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cagctctgcagtcctgtaggcaagagtccgggttcaatctttatcaatatggaaaacaag 539
Query: 177 aaggagaaggatcacagctgacagaactgggtagcaatttgtgactcaaaaacctaagcg 236
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 538 aaggagaaggatcacagctgacagaactaggtagcaatttgtgactcaaaaacctaagcg 479
Query: 237 acttacctgaagtcactctaatattaagtgaggtttagaatatcttaacaaaccctggtt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 acttacctgaagtcactctaatattaagtgaggtttagaatatcttaacaaaccctggtt 419
Query: 297 ccaagacctgcaacctggaatcagtttcttctttataaaaaccatcatttttatcatctc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccaagacctgcaacctggaatcagtttcttctttataaaaaccatcatttttatcatctc 359
Query: 357 tgc-cccccttttttttttaacttaactttttgaaatggtcaaatatactaatatttgtg 415
||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 358 tgcaccccctttttttttttacttaattttttgaaatggtcaaatatactaatatttgtg 299
Query: 416 aatgattcataacgtcaacataactgtaagcaaatgtgcttctgaggttaaaagaaggca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aatgattcataacgtcaacataactgtaagcaaatgtgcttctgaggttaaaagaaggca 239
Query: 476 atgtattagttcctgttctttatgctgtgacaaacacttgcgagataaaactgaaaacca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atgtattagttcctgttctttatgctgtgacaaacacttgcgagataaaactgaaaacca 179
Query: 536 gaaagaattactacagatcatggtttcaggggttctgtctctgatcacttggccccaggt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaaagaattactacagatcatggtttcaggggttctgtctctgatcacttggccccaggt 119
Query: 596 gcttagttagtatatcatggcagtaggagcatgtcgctgaagagaactgctcatctctgg 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gcttagttagtatatcatggcagtaggagcatgtcgctgaagagaactgctcatctctgg 59
Query: 656 cagacaga 663
||||||||
Sbjct: 58 cagacaga 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space: 688262
Effective search space used: 688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_a12.g1 MSMg01no481_a12.g1 CHROMAT_FILE:
MSMg01no481_a12.g1 PHD_FILE: MSMg01no481_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:31 2005
(626 letters)
>mm_chr19_14557027_14558052
Length = 1026
Score = 1164 bits (602), Expect = 0.0
Identities = 620/626 (99%)
Strand = Plus / Plus
Query: 1 tgaaaaaatttttgggccttcattcacattcaatgcatgtaaacacaggattccttgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaaaaatttttgggccttcattcacattcaatgcatgtaaacacaggattccttgttg 260
Query: 61 aaatgcacggtaacacagaaaaatgaagtccacggtgatccagagaggagctgactacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgcacggtaacacagaaaaatgaagtccacggtgatccagagaggagctgactacat 320
Query: 121 ccttgttctttggtcccccgtatgttgaaaggtcatggtaccatcaagagatgaggctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgttctttggtcccccgtatgttgaaaggtcatggtaccatcaagagatgaggctta 380
Query: 181 gtgcaaggtaattaggcagcggagagaaagctgctcttaaaagggatgactcacactttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcaaggtaattaggcagcggagagaaagctgctcttaaaagggatgactcacactttg 440
Query: 241 tgcagcccccgaatcccgctggcttcctacttcagcacatgtatgttcatgccattaaca 300
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tgcagcccccgaatccctctggcttcctacttcaccacatgtatgttcatgccattaaca 500
Query: 301 tgtcatacaagggtccaccaaaggatgacaaatagacccactccacttaaggctgacctt 360
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 tgtcatacaaggctccaccaaaggatgacaaatagatccactccacttaaggctgacctt 560
Query: 361 taaaactgtaaaccaattaaatctttttaaaatacccagcttcaggtattttatgacagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaactgtaaaccaattaaatctttttaaaatacccagcttcaggtattttatgacagc 620
Query: 421 agaaaacaaagaaatacaacctattattatgtctcagcctctaaaactgtaagcctaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaaacaaagaaatacaacctattattatgtctcagcctctaaaactgtaagcctaaga 680
Query: 481 aactgtttgtttgtttgttttcttaatacctagtcttgatgggtcatagtggtgcatgcc 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 aactgtttgtttgtttgttttcttaatatctagtcttgatgggtcatagtggtgcatgcc 740
Query: 541 ttttaatcccagcactctgcaggcaaaggcaagcagagctttgtgagttcgaggccagcc 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 ttttaatcccagcactctgcaggcaaaggcaagcatagctttgtgagttcgaggccagcc 800
Query: 601 tagtctacagattgagtcccaggaca 626
||||||||||||||||||||||||||
Sbjct: 801 tagtctacagattgagtcccaggaca 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
