BAC Information

Click to search

BAC

Clone NameMSMg01-481F21
Chromosome19 (Build37)
Map Location 5,430,887 - 5,431,436
singlet/doubletsinglet
Overlap genenone
Upstream geneRhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181
Downstream geneLOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481F21.T7 (MSMg01no481_f21.b1)MSMg01-481F21.TJ (MSMg01no481_f21.g1)
ACCAG561790AG561791
length763758
length of high quality
(start - end)		623 (45 - 667)617 (70 - 686)
definitionCHROMAT_FILE: MSMg01no481_f21.b1 PHD_FILE: MSMg01no481_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:59 2005CHROMAT_FILE: MSMg01no481_f21.g1 PHD_FILE: MSMg01no481_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAACTGTGTTCCATGTAGTCCCAATTATAATTAGAAATGGCAGGGA
GAGCGCCCTGGAGACCTAAGAGAAGAACCCCATATCCACTTCACCCTGTT
CTCTCTCCAATATGCAACGGCTACTCAGAAATCACTCCCACTTTGATATT
AGCATAATAGGGTTCCTGGGACAAACTGATATTATTATCCTAACTAAAGT
TGGATTTCTGCCCCTACCTCTGTTACCTGCTTGGCTTTAAAAAGGCCCAT
CACTGAGACCTGCTCAGTATTTACTGGTGGAGGGAAGAGGGGAGCCATGG
CAATAATGTACTACCCCCCCCAGGAATGAACTCCCCACTCTTTGATTCAG
ACAGTTGCCCCATCACTCCCCAAATATAAGAAACTACATGTAATTTATTT
AGTCCTCAAGGAAGTCAATGGGCCTTTTTTTCTTTTCTTGGACAGTATAT
ATGCTGTGAATTTGCTTCCCTGGTTATCAAGCTTCTTTGTCAAACTAGCT
GAGAATCCACTATCCCCTCTTCTCATCCACATCTCCATCCTCTTACAGGA
AAGGGCGTCACCCCTCTACAGCCAGCAGGTCAAATCTCACAGATCCCTAC
AAGGTCTAATATCTGAGCCCTCACTGAGCAAACTGCCTCTATAGGAACAT
TCACAGCCTCTGCTGAGCAAGCAGATCGATTTCATTCACACACGCGCGTG
CATGCACGCACAN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGGGACTCAGTTTCCCTTTCTGCAAAAAT
GGCAAGAATGCCAGAGCTCGAGGCTGCAGAGGGGGCACACACGAGTCACA
CACTGGCTGTGGCAAAGGACGCAAGTGTCATTCCAAACATCCACACGGTA
GATCAAAACCATCTGTAACTCTAGTGTCAGGGAATCCAACATCCTCTTCT
GGCTTCCCTGGACACAAAGAACACATGAGGCACACAGACAGACTCATAGG
AACAACGTCCACCACATAAAATCATTTAAAAATAAAAGAACTAAATGGAG
CTTAGATAATGTATGGTTTTCATACAATCCCTCTGGATTCAAGAATGTTA
TTTGGTGCTTGCACCAGGCTTGACTCTGATCTGGATGCTGAAGGTGCCCT
GAGGATAAACTAGTCATTGTCCTTGAGAGTCCCTAGACATATAGATTGAA
AGCCACACGTAGGAGAGCCACGCGGTTAGAAAGCTAGTGGGTCTGAGATG
TGCCATAAGCTAGCAGTGGTGATGTCAGGCATGCCAACAGAAGTTACCCA
TCAACAGAGGCATCAAAGTGGGAAAGGGTAGAACGTGGGCAGGAAAGCCA
TGTTCTAGAGCAAAGATAAAGATAAAGCGGAGAGATCAAACAGGTGGAAC
TCACAATACCTAGATCTGATGCAAGTCTTTTACTTCATGATCTCTGAAGA
GTTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_f21.g1 MSMg01no481_f21.g1 CHROMAT_FILE:
MSMg01no481_f21.g1 PHD_FILE: MSMg01no481_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:59 2005
         (617 letters)



>mm_chr19_5430420_5431436
          Length = 1017

 Score =  996 bits (515), Expect = 0.0
 Identities = 542/551 (98%), Gaps = 2/551 (0%)
 Strand = Plus / Minus

                                                                        
Query: 68   acacacgagtcaca-cactggctgtggcaaaggacgcaagtgtcattccaaacatccaca 126
            |||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1017 acacacgagtca-agcactggctgtggcagaggacgcaagtgtcattccaaacatccaca 959

                                                                        
Query: 127  cggtagatcaaaaccatctgtaactctagtgtcagggaatccaacatcctcttctggctt 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  cggtagatcaaaaccatctgtaactctagtgtcagggaatccaacatcctcttctggctt 899

                                                                        
Query: 187  ccctggacacaaagaacacatgaggcacacagacagactcataggaacaacgtccaccac 246
            |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 898  ccctggacacaaagaacacacgaggcacacagacagacgcacaggaacaacgtccaccac 839

                                                                        
Query: 247  ataaaatcatttaaaaataaaagaactaaatggagcttagataatgtatggttttcatac 306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  ataaaatcatttaaaaataaaagaactaaatggagcttagataatgtatggttttcatac 779

                                                                        
Query: 307  aatccctctggattcaagaatgttatttggtgcttgcaccaggcttgactctgatctgga 366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  aatccctctggattcaagaatgttatttggtgcttgcaccaggcttgactctgatctgga 719

                                                                        
Query: 367  tgctgaaggtgccctgaggataaactagtcattgtccttgagagtccctagacatataga 426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  tgctgaaggtgccctgaggataaactagtcattgtccttgagagtccctagacatataga 659

                                                                        
Query: 427  ttgaaagccacacgtaggagagccacgcggttagaaagctagtgggtctgagatgtgcca 486
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 658  ttgaaagccacacgtaggagagccacacggttagaaagctagtgggtctgagatgtgcca 599

                                                                        
Query: 487  taagctagcagtggtgatgtcaggcatgccaacagaagttacccatcaacagaggcatca 546
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 598  taagctagcagtggtgatgtcaggcatgccaacagaggttacccatcaacagaggcatca 539

                                                                        
Query: 547  aagtgggaaagggtagaacgtgggcaggaaagccatgttctagagcaaagataaagataa 606
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 538  aagtgggaaagggtagaacgtgggcaggaaagccgtgttctagagcaaagataaagataa 479

                       
Query: 607  agcggagagat 617
            |||||||||||
Sbjct: 478  agcggagagat 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |