Query= MSMg01no482_d12.b1 MSMg01no482_d12.b1 CHROMAT_FILE:
MSMg01no482_d12.b1 PHD_FILE: MSMg01no482_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:05 2005
(675 letters)
>mm_chr19_51382335_51383410
Length = 1076
Score = 1007 bits (521), Expect = 0.0
Identities = 554/565 (98%), Gaps = 4/565 (0%)
Strand = Plus / Minus
Query: 5 gaattcattgtttttaatagctgagtagtactccgttgtttaaatgtaccacattttgct 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 gaattcattgtttttaatagctgagtagtactccgttgtttaaatgtacc-cattttgct 505
Query: 65 tttcttattcacctttcttttcttgtgtcccctggaagcctctgatgagactagaaacag 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttcttattcgcctttcttttcttgtgtcccctggaagcctctgatgagactagaaacag 445
Query: 125 gggatgaattgaacaggggaagtcactgttgtttttctcatttgcacctcaagttttcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggatgaattgaacaggggaagtcactgttgtttttctcatttgcacctcaagttttcag 385
Query: 185 tatgtaatgttgtgtgctgggagatatttgaaaggg-tttttcagggcacacagaagtgt 243
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 tatgtaatgttgtgtgctgggagatatttgaaaggggtttttcagggcacacagaagtga 325
Query: 244 ttaatttagtaaatgtctgaaagaaataagtgaggagccaggcagtggtgtcacatgcct 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaatatagtaaatgtctgaaagaaataagtgaggagccaggcagtggtgtcacatgcct 265
Query: 304 ttaatcccagcacttgggaggcagaggcaggcagatttctgagtttgaagccagcttggt 363
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaatcccagcact-gggaggcagaagcaggcagatttctgagtttgaagccagcttggt 206
Query: 364 cttcagagagagtttcaggacagccaagattatacagagaaatccagtctcgaaaaaa-g 422
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 cttcagagtgaatttcaggacagccaagattatacagagaaatccagtctcgaaaaaaag 146
Query: 423 caaacaaataaacaaacaaacaaactaaagagtgaggagacccaaattattttataattc 482
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 145 caaacaaataaacaaacaaacaaacaaaagagtgaggagacccaaattattttataattc 86
Query: 483 tgttactgagcctacagtttgtagttttgattattgtattctgtggacagtaaccaaatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 tgttactgagcctacagtttgtagttttgattattgtattctgtggacagtaaccaaatc 26
Query: 543 tcatgggacacaactttaataatca 567
|||||||||||||||||||||||||
Sbjct: 25 tcatgggacacaactttaataatca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_d12.g1 MSMg01no482_d12.g1 CHROMAT_FILE:
MSMg01no482_d12.g1 PHD_FILE: MSMg01no482_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:05 2005
(663 letters)
>mm_chr19_51318894_51319958
Length = 1065
Score = 1180 bits (610), Expect = 0.0
Identities = 651/666 (97%), Gaps = 4/666 (0%)
Strand = Plus / Plus
Query: 1 accccgtgctatatgaagattcttattcttttccacaattaatatatgtcttaaatttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accccgtgctatatgaagattcttattcttttccacaattaatatatgtcttaaatttgc 260
Query: 61 ctcatgctatatgaagtatcttctctttttttccactatagattaacttagttatcaata 120
||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ctcatgctatatgaattatcttttctttttttccactatagattgacttagttatcaata 320
Query: 121 tttgcatttactatggaagcccctagcatttttttttcatttgtaaacagagatggaaaa 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tttgcatttactatggaagcccctagcatttttttt-catttgtaaacagagatggaaaa 379
Query: 181 tggttctcaactgcagtatgaaaaatatagttagggaacagtctttgtatttatgaacca 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 tgtttctcaactgcagtatgaaaaatatagttagggaacagtctttgtatttatgaatca 439
Query: 241 aaattagagtttattggtatttggttttgctatagatgtatgtgtataagaatgactaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaattagagtttattggtatttggttttgctatagatgtatgtgtataagaatgactaag 499
Query: 301 gtagacacacacttaagcaaagaagagtaacatcaatatgctgtgtgagccaagggggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtagacacacacttaagcaaagaagagtaacatcaatatgctgtgtgagccaagggggca 559
Query: 361 ggctgggggg---cagggagaagaatagagcaggtcacagagggagggataaaaaaagga 417
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 560 ggctgggggggggcagggagaagaatagagcaggtcacagagggagggataaagaaagga 619
Query: 418 gggagggcaggtgggagggagtcaggatctacaatagattttagaaaagaatacaaaata 477
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 gggagggcaggtgggagggagtcagaatctacaatagattttagaaaagaatacaaaata 679
Query: 478 gaattggtaatagaataacttttctattacaaattagaaggcaataaactgctacgtggt 537
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 680 gaattggtaatagaataacttttctattacaaattagaaggtaataaactgctacgtggt 739
Query: 538 aatacataagaatagcattccatacctatttaagtccaaaatcctaacgtattcaaaggc 597
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 740 aatacataagaatagcatttcatacctatttaaatccaaaatcctaacgtattcaaaggc 799
Query: 598 ctttatttcaagttaaaataagaaagaatctgaacagagagtatacgataaatactaaaa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 800 ctttatttcaagttaaaataagaaagaatctgaacagagagtatacgataaatacaaaaa 859
Query: 658 agatgg 663
||||||
Sbjct: 860 agatgg 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1065
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1055
Effective search space: 688915
Effective search space used: 688915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
