BAC Information

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BAC

Clone NameMSMg01-482E14
Chromosome19 (Build37)
Map Location 16,693,936 - 16,694,569
singlet/doubletsinglet
Overlap geneVps13a
Upstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665
Downstream geneFoxb2, A230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482E14.T7 (MSMg01no482_e14.b1)MSMg01-482E14.TJ (MSMg01no482_e14.g1)
ACCAG562488AG562489
length752764
length of high quality
(start - end)
634 (65 - 698)650 (75 - 724)
definitionCHROMAT_FILE: MSMg01no482_e14.b1 PHD_FILE: MSMg01no482_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:10 2005CHROMAT_FILE: MSMg01no482_e14.g1 PHD_FILE: MSMg01no482_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCAATTTCTACTGCCACTCACATGTAAGCTGTCCAAATGTTCCCT
TTGTTACGAACAACACGCCACTAAGAGAAGGGAAGAGATAATTCACTTTG
AGAATTGATGAACCTAAGTCAAAAATGTGTAAGATTTTCATTTTTATTTT
TACATTTTGCAAGCACACATGGAATATTCACCTAGACATACTGTAAATCA
TACTAAAAGCTTATTTTTCAAAAACCTTTTATGTGTGTAGGCCTGAGTGT
ATGTACGTATACTTGTGCAGAGGTCTGAAGAGGCCATTGGACCATGCTGG
GACTGGTAGCACTGATATAGGTGCTAAGAACCAAACCTGCAACCTCTGCA
ATGGTACAACTGTTGTCCTTAACTGCTGAGACATGTCTACATCTCTACAA
GCAATATTAATTTATGGCTTGTGTATGCTTAATTTATTATGCTTAATGGT
AAAATGCCTGCCTAAAGAGTCAACATACTGAAAATCCTTGGGGTTTTCCA
GAGGAAATCAAGCCCATCACTGTCAAAAATCAAAGAGAATTAGAAAAAAA
AATCTAATATTTCCATCATTTCTTGTTCTACTTTGGAGGAGAAATTAGAA
ACATGCATTTCATCTATGATTCTACTTAACACTTCCCTCACAGGACAGTC
TCCCATAGTTGTTCTTTNAAGTTGAGACATCAATTTTAAGTTGATAGCAT
AC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACATCTGATCCACAACCACAAGGGAA
AGAAGGCTGAGAACTAAATGGGCTTTTCATATTGAGAACGAAAACCTCAA
GGTCCACCCCCAGTTGACCCATCTCTCTCAACAAGGTCACCCTCCTAATT
CTGCCCAGATAGTCTCATCAACTAGTGACCAAGCATTCAAATATATGAGT
CTATGGGAGAAGCACAAGAAGATGACCTTAAATCAAATCTTAGAAAAGTG
ATAGAGGTCTCTAAAGAGGAAGTGAATAAATCCCTTAAAGACATACAAGA
AAATAAAATCAAACAGGTGAAGGAAATGAATAAAAACGTTCCAGAACTGA
AAATGGAAATAGAAGTAATAAAAAAAAAAACCACAGACTGAGGGACTTGT
AGAGATGGAAAACCTAAGGAAGAGAACAGGAACAGCATTTGCAAGCATCA
CCAACAGAATACCAAAGATGGAAGAGAAGATCTCAGGGATAGAAAATATA
ATTGAAGAAATTGATAATGGGTCAAAGAAAATGCTAAATCTAAAATGTTT
ATGACACAAAATGTCCAAGAAGTCTAGGACACCATGAAAAGACCAAAGCT
TAACACTTCTTATAGGGGATCTCAGGAAGGTTGCAGGGCAGAAGAGGGTG
AAGGTAAATTGCTGAGCAGCTTCACCCAAGATATTTGCTGGGCCGATGAA
GGTGTTGGAACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_e14.b1 MSMg01no482_e14.b1 CHROMAT_FILE:
MSMg01no482_e14.b1 PHD_FILE: MSMg01no482_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:10 2005
         (634 letters)



>mm_chr19_16693736_16694769
          Length = 1034

 Score = 1180 bits (610), Expect = 0.0
 Identities = 628/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgccactcacatgtaagctgtccaaatgttccctttgttacgaacaacacgccactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgccactcacatgtaagctgtccaaatgttccctttgttacgaacaacacgccactaa 260

                                                                       
Query: 61  gagaagggaagagataattcactttgagaattgatgaacctaagtcaaaaatgtgtaaga 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaagggaagagataattcactttgagaattgatgaacctaagtcaaaaatgtgtaaga 320

                                                                       
Query: 121 ttttcatttttatttttacattttgcaagcacacatggaatattcacctagacatactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcatttttatttttacattttgcaagcacacatggaatattcacctagacatactgt 380

                                                                       
Query: 181 aaatcatactaaaagcttatttttcaaaaaccttttatgtgtgtaggcctgagtgtatgt 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcatactaaaagcttatttttcagaaaccttttatgtgtgtaggcctgagtgtatgt 440

                                                                       
Query: 241 acgtatacttgtgcagaggtctgaagaggccattggaccatgctgggactggtagcactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgtatacttgtgcagaggtctgaagaggccattggaccatgctgggactggtagcactg 500

                                                                       
Query: 301 atataggtgctaagaaccaaacctgcaacctctgcaatggtacaactgttgtccttaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atataggtgctaagaaccaaacctgcaacctctgcaatggtacaactgttgtccttaact 560

                                                                       
Query: 361 gctgagacatgtctacatctctacaagcaatattaatttatggcttgtgtatgcttaatt 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgagacatgtctacatctctgcaagcaatattaatttatggcttgtgtatgcttaatt 620

                                                                       
Query: 421 tattatgcttaatggtaaaatgcctgcctaaagagtcaacatactgaaaatccttggggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattatgcttaatggtaaaatgcctgcctaaagagtcaacatactgaaaatccttggggt 680

                                                                       
Query: 481 tttccagaggaaatcaagcccatcactgtcaaaaatcaaagagaattagaaaaaaaaatc 540
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 681 tttccagaggaaatcaagcccatcactgtcaaaaatcagagagaattaaaaaaaaaaatc 740

                                                                       
Query: 541 taatatttccatcatttcttgttctactttggaggagaaattagaaacatgcatttcatc 600
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatatttccaacatttcttgttctactttggaggagaaattagaaacatgcatttcatc 800

                                             
Query: 601 tatgattctacttaacacttccctcacaggacag 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 tatgattctacttaacacttccctcacaggacag 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)