BAC Information

Click to search

BAC

Clone NameMSMg01-482G03
Chromosome19 (Build37)
Map Location 59,833,577 - 59,833,820
singlet/doubletsinglet
Overlap genenone
Upstream genePnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482G03.T7 (MSMg01no482_g03.b1)MSMg01-482G03.TJ (MSMg01no482_g03.g1)
ACCAG562561AG562562
length707657
length of high quality
(start - end)
244 (54 - 297)343 (297 - 639)
definitionCHROMAT_FILE: MSMg01no482_g03.b1 PHD_FILE: MSMg01no482_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:17 2005CHROMAT_FILE: MSMg01no482_g03.g1 PHD_FILE: MSMg01no482_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACCACTCACTTTTCACAGXXXXXXXXXXXXXXXXXXXXXTTACCCCAT
CTCCTAAGTTCCATTCTTCGATATCCCACAGCGAGCTAGACCAACATCTG
GATGGATGGAGCAACACTAACATGAGCTAAGGGGCCTCATGTTAAAGGAG
CACTGACTGGTTACTACCCTGTGCCAGCACATGACAGCTCCTCTCTTCCC
TATCCTACATCTAGGACAGAGTCCAGAGGCTTCTCTGATATGTGGATTTT
ATTCTGACAAGATGCTCTGGGCAACTTCAAAACAACTTGCAAGTTCCTAT
ATTAGCAACATCAAGTCTCCAAGGGTGATAGATATTAGACACAGTAACAG
ATTCCTGAGCCCATCCAGTTGGAATCAAGAAAATGCACTTCATAAGTTTC
TTAGATGATGTTACAGAACCACAAGTGAGGCAATGACCACTCTATGGGTT
ACCTTTCCTAGGTCAAAATACCAGGCAAACACAGTTTAAGGAAGAGGTTT
CCTTTTGGCTTATACTTCAAAGGGGATTCAATGTATCATAGCAGTGGGTG
AGGTGGGGAAGCAGTGCAGTAGAAGGCAGCTTGTCACATGGTATCCACTT
CATGGGGATACAGTGTAGAATAGTGTGTGTGGGGGGGGGCATCAGTGTAG
TACAAGGTAGCTTCATGGGAACAGACAGAAAATAGGAAGTTGAGCTTGCC
TATAAAC
GCCCGGATGCGTACTTGANGTGAACTANAGAAGGTGGCAAAAACGGGCTC
TATAGACCAGGCTGACCTTGAACTCAGAGATCCACCTGTCTCTGCTTTCC
AACTGCTGGGATTAAATGTGTGTACCACCACCAGGCTTTAAGAAATCTTT
TAAGACTAGTGTATAAACAGTCTTTATCTCAGGATTTGTAAATTCATTGG
GTGTGGTTAAAGAATCTGTAAAATCTGAAACAAAAAAGTTAGCTTAGAAC
TTGTTACAAAAGGTTGAATCTTAATTTGTTATATTATTCATTTTTTATTT
AGAAAAATGGATCTGCTTACTGTATATGTAACTTAAATTCAACTCTTGTT
TAAGGAAATAGATGTTTTCAAATAGCAGTGACTCAAAGGCATAAGTCTAC
TGCCTTTTCTATGATGTGGATTTCAGTGCAGTTTACAAACAGTGGAGATA
CTAATATATATAAAGCGCTTATATCTTTTTTGTAAACTTGAAAGTATTCA
TGGAAGCTTTAGGGACTTGACTTGGATCCACCTCTCATAGGTCAAATGGA
CTCCAGATAAGCATTCCTAAGTTTCCCCACCTGCTTATTCCTGAGGTGGG
ATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTC
ATTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_g03.b1 MSMg01no482_g03.b1 CHROMAT_FILE:
MSMg01no482_g03.b1 PHD_FILE: MSMg01no482_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:17 2005
         (244 letters)



>mm_chr19_59833377_59834020
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagttccattcttcgatatcccacagcgagctagaccaacatctggatggatggagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaagttccattcttcgatatcccacagcgagctagaccaacatctggatggatggagca 385

                                                                       
Query: 61  acactaacatgagctaaggggcctcatgttaaaggagcactgactggttactaccctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acactaacatgagctaaggggcctcatgttaaaggagcactgactggttactaccctgtg 325

                                                                       
Query: 121 ccagcacatgacagctcctctcttccctatcctacatctaggacagagtccagaggcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagcacatgacagctcctctcttccctatcctacatctaggacagagtccagaggcttc 265

                                                                       
Query: 181 tctgatatgtggattttattctgacaagatgctctgggcaacttcaaaacaacttgcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgatatgtggattttattctgacaagatgctctgggcaacttcaaaacaacttgcaag 205

               
Query: 241 ttcc 244
           ||||
Sbjct: 204 ttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)