BAC Information

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BAC

Clone NameMSMg01-482I10
Chromosome19 (Build37)
Map Location 52,265,971 - 52,266,490
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936
Downstream geneIns1, LOC100043450, Xpnpep1, LOC668545, LOC674277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482I10.T7 (MSMg01no482_i10.b1)MSMg01-482I10.TJ (MSMg01no482_i10.g1)
ACCAG562671AG562672
length695734
length of high quality
(start - end)
446 (49 - 494)528 (77 - 604)
definitionCHROMAT_FILE: MSMg01no482_i10.b1 PHD_FILE: MSMg01no482_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:27 2005CHROMAT_FILE: MSMg01no482_i10.g1 PHD_FILE: MSMg01no482_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTATACGACTCACTTTTCGGAGAGGATCCGCGGAATTCCTTCTTCCTGT
CCTCTACCATCATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCA
GGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGA
TGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTT
TCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAA
AGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGA
TTAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAG
CTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTC
CTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTG
CTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCATCCT
CAGAAGCTCTGTGGCTCTTGCAGGGAAGGTGGCTGGTTGTCTGTGGCTGA
CGATGGTGCCGCCCCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAAC
GGCTGGCACTCTGTATTCCACACGGGCACCCGTGCAGCCTGCCCTCCGCG
GAGTCCCTGGAGCTCATAAGGCTCCCGCTTCGCGCCCTGTGTCAC
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTCTTTACCTCTTCCAGCTTTC
TTCAATTTCCTGCTCCTTTCCTCTGCTCTCCTTATGAGGCCACTGGAGAA
ATCTAGAGGCTGCTGGCAAGGGCAATGTGCACTATTTACTCCTATGAGTT
AGGGAGTCCCACAGTCTCCTACAGGGGAAATGTAAACCTGCCCAGAATAA
AGCCAGCATCCCAGTCATGGGGTACAGTAGAACAAGACCCTGAAGATGCT
TTAGGAAGAGGGATAGTAGAAAAAGGACCAACTCCAAATATGTGGAATCA
TTAGTCCTATAGACTTGGCTAAATAAAAGGAACAATTTTAAAGCACGATT
TTTTTAATTAAAAAAATTAAGATACAAGTAGAAAAACCTATCCCTTGGAT
ATAATGAGGTTTGGTTCAATTCATGAACTGAGCTCAAATCAGCTTAAACT
AGTAACAAAAATTACAGAGAATCTGGGTCTGATAAACTTCAAGATTGACG
TAACAACCCATTATTATGCCGGAAACCAACCCTTGAGGTATTGTCAAATG
TCAAGTGGTGATACCAGAGAGCAAATGGGAAGACAACACAGGCCGCGAAG
GTTTTCCATAAATGGGGCTGGCAAGGCCATGCTTTAGCACAGTGGAGTAT
AAAGTGGTCATCATTGCAATTTCTGACTCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_i10.g1 MSMg01no482_i10.g1 CHROMAT_FILE:
MSMg01no482_i10.g1 PHD_FILE: MSMg01no482_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:27 2005
         (528 letters)



>mm_chr19_52265971_52266898
          Length = 928

 Score =  936 bits (484), Expect = 0.0
 Identities = 509/520 (97%), Gaps = 6/520 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttctttacctcttccagctttcttcaatttcctgctcctttcctctgctctccttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 acttctttacctcttccagctttcttcaatttcctgctcctttcctctgctctccttatg 461

                                                                       
Query: 61  aggccactggagaaatctagaggctgctggcaagggcaatgtgcactatttactcctatg 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aggccactggagaaagctagaggctgctggcaagggcaatgtgcactatttactcctatg 401

                                                                       
Query: 121 agttagggagtcccacagtctcctacaggggaaatgtaaacctgcccagaataaagccag 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 400 agttagggagtcccacagtctcctacaggggaaacgtaaacctgcccagaataaagccag 341

                                                                       
Query: 181 catcccagtcatggggtacagtagaacaagaccctgaagatgctttaggaagagggatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 catcccagtcatggggtacagtagaacaagaccctgaagatgctttaggaagagggatag 281

                                                                       
Query: 241 tagaaaaaggaccaactccaaatatgtggaatcattagtcctatagacttggctaaataa 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 280 tagaaaaaggaccaactccaaatatgtggaatcattagacctatagacttggctaaataa 221

                                                                       
Query: 301 aaggaacaattttaaagcacgatttttttaattaaaaaaa-ttaagatacaagtagaaaa 359
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 220 aaggaacaattttaaagcacaatttttttaattaaaaaaaattaagatacaagtagaaaa 161

                                                                       
Query: 360 acctatcccttggatataatgaggtttggttcaattcatgaactgagctcaaatcagctt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 acctatcccttggatataatgaggtttggttcaattcatgaactgagctcaaatcagctt 101

                                                                       
Query: 420 aaactagtaacaaaaattac-----agagaatctgggtctgataaacttcaagattgacg 474
           ||||||||||||||||||||     ||||||||||||||||||||||||||||||||| |
Sbjct: 100 aaactagtaacaaaaattactctacagagaatctgggtctgataaacttcaagattgatg 41

                                                   
Query: 475 taacaacccattattatgccggaaaccaacccttgaggta 514
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  taacaacccattattatgccggaaaccaacccttgaggta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)