BAC Information

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BAC

Clone NameMSMg01-482O24
Chromosome19 (Build37)
Map Location 12,121,826 - 12,122,419
singlet/doubletsinglet
Overlap genenone
Upstream geneAW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423
Downstream geneOlfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482O24.T7 (MSMg01no482_o24.b1)MSMg01-482O24.TJ (MSMg01no482_o24.g1)
ACCAG562984AG562985
length602746
length of high quality
(start - end)		576 (6 - 581)596 (75 - 670)
definitionCHROMAT_FILE: MSMg01no482_o24.b1 PHD_FILE: MSMg01no482_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:57 2005CHROMAT_FILE: MSMg01no482_o24.g1 PHD_FILE: MSMg01no482_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGT
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCT
TGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATA
TAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAA
GATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAG
AGGAATGGATACAGAAGATGTGGTACATCTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCAAATGGATGGACCT
GGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACA
ATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAAGATACCCAA
GT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGTTTACACAGAAGGGGAGGGGCA
GTGCCTAGACCTCTGTAGGAGACATTGGAATACTGCTTTTTTTTTTTTTT
AAACTTCTCCCTATTTGGCCCTCAACTCAATGAATGATGGGGGCTTTCAC
TAATTGTGAACCTGTAGATGATATCAATCATGGAGGAGGAAGAAGCAGGG
CAAGGGGGCTGGTGGCACTCATAAGACAGTAGTAGAGCAGAAAGGTGTAG
CTTCCTAGGTCTTAATGTTGTTGTCCCAGTTTTACTTTCTGACTAAAGAT
AGGAGCCAAGTAGAGATCTGCTTTGCTCTTCTGCTATGTTCCTCCTTCAT
CTCTACTGTCTGCAACATCATTAGATACATTTGTATGTTACTTCGATAAA
GCAGTTGCAGAGTAATGTTGCCCTTGGCAGTCTCTCCATGTCAAAGGCCG
AGGTATCTGTGAATAGTCGCAGTGTACATCCACACAAAGAGGAAACTTTT
ACTTTTTCCTTAAATAGGAAGAAAAAGAAGAAAAACAAGCTTATTTCTCC
ATACCCATAATAGTAGTACAGTGGGAGACTGAATTAAAGATGTCACTGTA
CTTAGCTCCAAAGCCATTGTTATAACCACCATTTTTTTAAAGCATCCAGA
AGAATGGAATTAAATTTTCTCCCAAGTTTAAAGTAAAGACAGTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_o24.g1 MSMg01no482_o24.g1 CHROMAT_FILE:
MSMg01no482_o24.g1 PHD_FILE: MSMg01no482_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:57 2005
         (596 letters)



>mm_chr19_12121624_12122619
          Length = 996

 Score = 1125 bits (582), Expect = 0.0
 Identities = 591/594 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   agtttacacagaaggggaggggcagtgcctagacctctgtaggagacattggaatactgc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agtttacacagaaggggaggggcagtgcctagacctctgtaggagacattggaatactgc 262

                                                                       
Query: 63  ttttttttttttttaaacttctccctatttggccctcaactcaatgaatgatgggggctt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttttttttttttttaaacttctccctatttggccctcaactcaatgaatgatgggggctt 322

                                                                       
Query: 123 tcactaattgtgaacctgtagatgatatcaatcatggaggaggaagaagcagggcaaggg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcactaattgtgaacctgtagatgatatcaatcatggaggaggaagaagcagggcaaggg 382

                                                                       
Query: 183 ggctggtggcactcataagacagtagtagagcagaaaggtgtagcttcctaggtcttaat 242
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 383 ggctggtggcactcataagacagtagtagagcagaaaggtgtagcatcctaggtcttaat 442

                                                                       
Query: 243 gttgttgtcccagttttactttctgactaaagataggagccaagtagagatctgctttgc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gttgttgtcccagttttactttctgactaaagataggagccaagtagagatctgctttgc 502

                                                                       
Query: 303 tcttctgctatgttcctccttcatctctactgtctgcaacatcattagatacatttgtat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcttctgctatgttcctccttcatctctactgtctgcaacatcattagatacatttgtat 562

                                                                       
Query: 363 gttacttcgataaagcagttgcagagtaatgttgcccttggcagtctctccatgtcaaag 422
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gttactgcgataaagcagttgcagagtaatgttgcccttggcagtctctccatgtcaaag 622

                                                                       
Query: 423 gccgaggtatctgtgaatagtcgcagtgtacatccacacaaagaggaaacttttactttt 482
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gccgaggtatctgtgaatagttgcagtgtacatccacacaaagaggaaacttttactttt 682

                                                                       
Query: 483 tccttaaataggaagaaaaagaagaaaaacaagcttatttctccatacccataatagtag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tccttaaataggaagaaaaagaagaaaaacaagcttatttctccatacccataatagtag 742

                                                                 
Query: 543 tacagtgggagactgaattaaagatgtcactgtacttagctccaaagccattgt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tacagtgggagactgaattaaagatgtcactgtacttagctccaaagccattgt 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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