BAC Information

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BAC

Clone NameMSMg01-483A04
Chromosome19 (Build37)
Map Location 5,883,691 - 5,884,370
singlet/doubletsinglet
Overlap geneSlc25a45
Upstream geneZdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik
Downstream geneTigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483A04.T7 (MSMg01no483_a04.b1)MSMg01-483A04.TJ (MSMg01no483_a04.g1)
ACCAG563039AG563040
length737739
length of high quality
(start - end)		688 (50 - 737)569 (82 - 650)
definitionCHROMAT_FILE: MSMg01no483_a04.b1 PHD_FILE: MSMg01no483_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:03 2005CHROMAT_FILE: MSMg01no483_a04.g1 PHD_FILE: MSMg01no483_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAGATATCTGCCTGCCTCTGCCTTCCTAGTGCTGAGATTA
AAGATCACCCTGAAGAGCTAGCTGCTTGACCTAGTTACATCCCTGACTCC
AACCTCACTGGTATGGTGACCCCCTCTTCTCCACATCCTCTCAGCTCAGT
CCAGTGCCACCCCAGATCCTGGCTGTCTAAGGGCTCTATTGCCTACCAAA
TCCCACCTGTTACCACCATCTCACCCCATCAGCCCTTTGGACAGAGGCGG
GGAGGGGTGTCCTGGGCTTCAGAGAGGTGTAATGCAGAAGGAAGAGCAAC
TCTATGATGTTGGGTCTGTTCTGCAGCTTCAGGTCCTCAGTTTCCTGCTG
CTGAACCTTTACTGAGCCCCAGCCCCTGCAAACATGTGGTCCTCCCTGGA
ATCAGGAAGCCCAGGAGCCTAGTCCCACATGTCCTTGAGTGCTTGTGCCT
GCTATCTCAGGAGGAGAGTCCAGTGCTGAGCCTATCAGACCTGATAACAA
GGGAGGCAGCCTGTTCTCAACTGCACCCAGACAGTTGGCCAAACCCAGCC
ATGTGGAAGGCTAGGAGTTGATGGCAGGAGCCTCTCTGCCCTGTTGTGAT
GAAAAGCTGACATTTTCCAAGCCTAAGCCCCACCCAGTCCCCTCCATGTC
TTTCTCCACAGGCCTACTGCCTGGCTCCTTTTGACCT

NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGAACTTCCCCTTGCT
TCCTCATGGGTGTTTGAATGAGAATGGCCCCCATAAGCCTATATGTTAGA
ATACTTGGTCCCCAGTTGGTGGGATTGTGTGGGAAGGATTAGGAGCTGTG
ACCTTGTTGGAGGAAGAGTGTCAAAAGTCCATTGCATTCTCAGCCACTGC
TCCTGTCCCCTCCCTGCCTGCTGCTGTGCTGTCACCATGACGGCCATGAG
CTCACCCTCTGAAACCATAGCCCCCATAATGGCTTCTTTTGTTTCTTTGT
TTGTTTTTTCCAAGACAGGGTTTCTCTGAATAGCCCTGGCTGTCCTGGAA
CTCACTCTGTAGACCAGGCCAGCCTCGAACTCAGAAATCTGCCTGCCTCT
GCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACTGCCTGGCCCAT
AATGGCTTCTTGTCTAAGTTGGCTTGGCCATGGTATCTAAGCATGCAACA
GAAAAGCAACTAAGACATCTGCCCCTTCTTCCCTCCTTCCCATTCTTCCT
GCTGGGGCTCGAACCCAGAGCCTCGTCTATATTAGGTTTTTGTTTGTTTG
TTTTTGAGACAGGATCCTGAAGTTTCAAACTTGTTATGTAGCTGAAGATG
ACTTGAATTCCTGATGCCCTGCCTCTACCTCCAGGCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_a04.b1 MSMg01no483_a04.b1 CHROMAT_FILE:
MSMg01no483_a04.b1 PHD_FILE: MSMg01no483_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:03 2005
         (688 letters)



>mm_chr19_5883487_5884570
          Length = 1084

 Score = 1166 bits (603), Expect = 0.0
 Identities = 664/687 (96%), Gaps = 10/687 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagatatctgcctgcctctgccttcctagtgctgagattaaagatcaccctga 64
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcacagagatctgcctgcctctgccttcctagtgccgagattaaagatcaccctga 264

                                                                       
Query: 65  agagctagctgcttgacctagttacatccctgactccaacctcactggtatggtgacccc 124
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 acagctagctgcttgacctagttacatccctgactccagcctcactggtatggtgacccc 324

                                                                       
Query: 125 ctcttctccacatcctctcagctcagtccagtgccaccccagatcctggctgt-ctaagg 183
           ||||||||||||||||||||||||||||||| |||||| ||||| ||  |||| ||   |
Sbjct: 325 ctcttctccacatcctctcagctcagtccagagccacctcagat-ct--ctgtcct---g 378

                                                                       
Query: 184 gct--ctattgcctaccaaatcccacctgttaccaccatctcaccccatcagccctttgg 241
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gctgcctattgcctaccaaatcccacctgttaccaccatctcaccccatcagccctttgg 438

                                                                       
Query: 242 acagaggcggggaggggtgtcctgggcttcagagaggtgtaatgcagaaggaagagcaac 301
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acagaggcgggga-gggtgtcctgggcttcagagaggtgtaatgcagaaggaagagcaac 497

                                                                       
Query: 302 tctatgatgttgggtctgttctgcagcttcaggtcctcagtttcctgctgctgaaccttt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tctatgatgttgggtctgttctgcagcttcaggtcctcagtttcctgctgctgaaccttt 557

                                                                       
Query: 362 actgagccccagcccctgcaaacatgtggtcctccctggaatcaggaagcccaggagcct 421
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 558 actgagccccagcccctgcaaacatgtggtcctccctgcaatcaggaagcccaggagcct 617

                                                                       
Query: 422 agtcccacatgtccttgagtgcttgtgcctgctatctcaggaggagagtccagtgctgag 481
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agtcccacacgtccttgagtgcttgtgcctgctatctcaggaggagagtccagtgctgag 677

                                                                       
Query: 482 cctatcagacctgataacaagggaggcagcctgttctcaactgcacccagacagttggcc 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cctatcagacctgataacaagggaggcagcctgttctcaactgcacccagacagttggcc 737

                                                                       
Query: 542 aaacccagccatgtggaaggctaggagttgatggcaggagcctctctgccctgttgtgat 601
           |||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 738 aaacccagccatgtgggaggctaggagctgatggcaggagtctctctgccctgttgtgat 797

                                                                       
Query: 602 gaaaagctgacattttccaagcctaagccccacccagtcccctccatgtctttctccaca 661
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 798 gaaaagctgacatttttcaagcctaagccccacccagtctcctccatgtctttctccaca 857

                                      
Query: 662 ggcctactgcctggctccttttgacct 688
           |||||||||||||||||||||||||||
Sbjct: 858 ggcctactgcctggctccttttgacct 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1084
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1074
Effective search space:   728172
Effective search space used:   728172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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