Query= MSMg01no483_h09.b1 MSMg01no483_h09.b1 CHROMAT_FILE:
MSMg01no483_h09.b1 PHD_FILE: MSMg01no483_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:40 2005
(596 letters)
>mm_chr19_57988979_57989976
Length = 998
Score = 1089 bits (563), Expect = 0.0
Identities = 591/605 (97%), Gaps = 9/605 (1%)
Strand = Plus / Minus
Query: 1 tcttcttgcc-accatgtggctgcatagtgagagaagtaactggcagagccagccctcct 59
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 711 tcttcttgccaaccatgtggctgtatagtgagagaagtaactggcagagccagccgtcct 652
Query: 60 atgatgcacccgctttattctcttttgtccaacactgcttttgttctgtgtctggaaata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atgatgcacccgctttattctcttttgtccaacactgcttttgttctgtgtctggaaata 592
Query: 120 cgtttcagtatcttagaagtcattctctcatttgtcttagtattttggcctcacactgtt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 591 cgtttcagtatcttagaagtcattctctcatttgtcttagtattttggcctcacactgct 532
Query: 180 tttataatcctaatagcatatacatgtttggtaggaaggctaacgtgtttgttctctttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tttataatcctaatagcatatacatgtttggtaggaaggctaacgtgtttgttctctttg 472
Query: 240 cttggtaattcttaatttgtctaagctgtgggagaaaacagtgttcttctcagcatttat 299
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 471 cttggtaattctgaatttgtctaagctgtaggagaaaacagtgttcttctcagcatttat 412
Query: 300 gctgtgctcagtggctcacgacctccaggacactgctttttgttcatgtgctttgagcca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gctgtgctcagtggctcacgacctccaggacactgctttttgttcatgtgctttgagcca 352
Query: 360 atatactttttccattataaacaaagaggaatgcaaacaagtcaatgtcaacaacagcat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atatactttttccattataaacaaagaggaatgcaaacaagtcaatgtcaacaacagcat 292
Query: 420 atggtctgaggtggatttacagttctgttcatattaggcagctgtgcagtggtttggtgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atggtctgaggtggatttacagttctgttcatattaggcagctgtgcagtggtttggtgc 232
Query: 480 ttaggttaaaactgttttctttcttt--------ttttcttttttctttttgttcctttt 531
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 231 ttaggttaaaactgttttctttctttctttttttttttcttttttctttttgttcctttt 172
Query: 532 tttattagatattttctttatttacatttcaaatgttatcccctttcctcctttcccctc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tttattagatattttctttatttacatttcaaatgttatcccctttcctcctttcccctc 112
Query: 592 tgaaa 596
|||||
Sbjct: 111 tgaaa 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 998
Length adjustment: 10
Effective length of query: 586
Effective length of database: 988
Effective search space: 578968
Effective search space used: 578968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_h09.g1 MSMg01no483_h09.g1 CHROMAT_FILE:
MSMg01no483_h09.g1 PHD_FILE: MSMg01no483_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:40 2005
(570 letters)
>mm_chr19_57853500_57854470
Length = 971
Score = 1006 bits (520), Expect = 0.0
Identities = 559/572 (97%), Gaps = 4/572 (0%)
Strand = Plus / Plus
Query: 1 agtagaaagacaactcagtttgcattcacttttcatgaaaataattaaaactattttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagaaagacaactcagtttgcattcacttttcatgaaaataattaaaactattttaat 260
Query: 61 taatgaaatgaatagcactcatacctcctgggttagttaaatcttctaggttgaatcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgaaatgaatagcactcatacctcctgggttagttaaatcttctaggttgaatcaat 320
Query: 121 tcaattcattattgactaataacatgtgtgcttagtgatgtgccaaaatgtgtgttgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tcaattcattattgactaataacatgtgtgcttagtgatgtgccaaaatgtgttttgact 380
Query: 181 tagaaaacattgctgctttgaatgggtttctaatctagaaatactacaaatgactttgaa 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaaacatttctgctttgaatgggtttctaatctagaaatactacaaatgactttgaa 440
Query: 241 tattgttaagttcccagatcagtagttaagtaatgtattaaagtaagttcttttttttaa 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 tatagttaagttcccagatcagtagttaagtaatgtattaaagtaagttctttttttaaa 500
Query: 301 -tttaatttttttttaacactcaagattttattcccctcctggtccttcctctgactgtt 359
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 atttaatttttttt-aacactcaagattttattcccctcctggtcctccctctgactgtt 559
Query: 360 ccacttcccatacctcctctccacacccc-cttgtctccatgaagatgtccccaccccca 418
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 560 ccacttcccatacctcctctccacaccccact-gtctccatgaagatgtccccaccccca 618
Query: 419 aaccttccgcccaaccagatctctaaactccctggggcctcaagtctcttgaaggttagg 478
||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 619 aactttccacccaaccagatctctaaactccctggggcctcaagtcccttgaaggttagg 678
Query: 479 tgcatcttctctgactaaactcagacacatcagcctctgctgtatatgtgttggggccct 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 679 tgcatcttctctgactaaactcagacacatcagcctctgctgtatatgtgttgggggcct 738
Query: 539 catatcagctagtgtatgctgcctggttggag 570
||||||||||||||||||||||||||||||||
Sbjct: 739 catatcagctagtgtatgctgcctggttggag 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
