BAC Information

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BAC

Clone NameMSMg01-484J19
Chromosome19 (Build37)
Map Location 18,039,709 - 18,039,925
singlet/doubletsinglet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484J19.T7 (MSMg01no484_j19.b1)MSMg01-484J19.TJ (MSMg01no484_j19.g1)
ACCAG564257AG564258
length752765
length of high quality
(start - end)
701 (52 - 752)219 (279 - 497)
definitionCHROMAT_FILE: MSMg01no484_j19.b1 PHD_FILE: MSMg01no484_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:14 2005CHROMAT_FILE: MSMg01no484_j19.g1 PHD_FILE: MSMg01no484_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTTTCCTCTGTACTCCATTTTTAAAGAGGGTTGTTTGGTT
TTCTGGAGTCCAACTTCTTGAGTTCTTTATATTTTGGATATTAGACCCCT
TTCGGATTTAGGACTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCTTT
TGGTCTTACTGACAGTGTCCTTTGCTTTACAGAAGCTCTGCAATTGTATG
AGGTCCCATTTCTCGATTCTTGATCTTACAGCACAAGCCATTGGTGTTCT
TTTCAGGAATATTTCCCCTGTGCCCATATCTTTGAGGCTCTTCCCCACTT
TCTCCTCTGTAAGTGTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATC
CACTTAGACTTGAGCTTTGTAAAAGGAGATAAGAATGGAACAATTCACAT
TCTTCTATATGCTAACCATCAATTGAGCCAGCACCATTTGTTGAAGATGC
TGTCTTCTTTCCACTGGATGGTTTTGGGTCCTTTGTCAAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCCATTCTGTTCCATTGATC
TACCTGTCTGTCACTGTTCCAGTACCATGCAGATCTCATACAGACCCTAA
GAGAACACAAATGCCACCCCAGGCTACTATACCTAACAAAACTCTCAATA
ACCATAGATGGAGAAACCAAAGTATTCCATAAGAAAATTAAGTTTACACA
AT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGACTATACAGAGAAA
CCCTCTCTCTNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCCNAACAAACAAAAAAAGAGTTACTCAGGTGATATTGGTTT
TAGAGACATTGAGTTATTTGCACTGTTGGAGTTTGGCTTTGTCTTGTGAA
GCTATGGCTGTATCTGTGTCTTGGGAAATAAAAAAGGTACTTTATTTTGA
TATTTTAAGGACACCCGAAAGAGTTTTAACTTCTCTAAAAAAAAAAATTG
GAGTTTTACAGAAAATTTAAATTAAAAAAAACCTAAATATTTTAAGGAAT
AAATTTTTAAAATATTTAAGTTTATAAAGCTATGAAACATTTTAAAGTTT
GTTAGGTATTTTATTATGATGTACTTATTAATATATGATCTTGATCAATA
GAGATGTAAAAGTCTAAAATTTAAATCCACAGCTAGGAGTGCCAAACATT
AAACACTAGAGACTGAGATATTTCTATCTTCTGATAGAGCAAGACAATGA
TGTAAGCAGTCTGGTAAAGGGTTTTCAACCTATGATTTCTGACCCTTTGT
GGGTCAGGAGATCCTTTCATAGGGTCAGCCTAGGACCACCTGCATGTCAG
ATGTTTGCATTGCAATTTATAACTATAGCAAAAATGCAGTTGTGAAATAT
CAATGAGAATAAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_j19.g1 MSMg01no484_j19.g1 CHROMAT_FILE:
MSMg01no484_j19.g1 PHD_FILE: MSMg01no484_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:14 2005
         (219 letters)



>mm_chr19_18039508_18040125
          Length = 618

 Score =  337 bits (174), Expect = 4e-97
 Identities = 207/218 (94%), Gaps = 1/218 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaaaaaggtactttattttgatattttaaggacacccgaaagagttttaacttctctaaa 61
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 202 aaaaaaggtactttattttgatattttaaggacaccggaaagagttttaacttctctaaa 261

                                                                       
Query: 62  aaaaaaaattggagttttacagaaaatttaaattaaaaaaaacctaaatattttaaggaa 121
           | ||||| |||||| ||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 262 agaaaaatttggagctttacagaaaaattaaatt-aaaaaaacctagatattttaaggaa 320

                                                                       
Query: 122 taaatttttaaaatatttaagtttataaagctatgaaacattttaaagtttgttaggtat 181
           || |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 321 tagattttttaaatatttaagtttataaagctatgagacattttaaagtttattaggtat 380

                                                 
Query: 182 tttattatgatgtacttattaatatatgatcttgatca 219
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttattatgatgtacttattaatatatgatcttgatca 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 618
Length adjustment: 9
Effective length of query: 210
Effective length of database: 609
Effective search space:   127890
Effective search space used:   127890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)