Query= MSMg01no484_p12.b1 MSMg01no484_p12.b1 CHROMAT_FILE:
MSMg01no484_p12.b1 PHD_FILE: MSMg01no484_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:43 2005
(343 letters)
>mm_chr19_53441912_53442654
Length = 743
Score = 553 bits (286), Expect = e-162
Identities = 326/348 (93%), Gaps = 15/348 (4%)
Strand = Plus / Minus
Query: 1 gagctgcactcgagcaggctcctcttgctaagcataccagaatcaccattaaaaccacgc 60
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 608 gagctgcacacgagcaggctcctcttgctaagcagaccagaatcaccattaaaaccacgc 549
Query: 61 accaggtgaaggcgccttc-------------ggattctacactgtggtttctgcctaac 107
|||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 548 accatgtgaaggcgccttcggattctacagtaggattctacactgtggtttctgcctaac 489
Query: 108 tgcgctccgtaagacacggctcgagggtgacacacatgctggccattttcttattaatta 167
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgcgctccataagacacggctcgagggtgacacacatgctggccattttcttattaatta 429
Query: 168 gaggctctgctctgaattcagccttctacaaaagaaagcaaccagaaaaatgaaggaagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaggctctgctctgaattcagccttctacaaaagaaagcaaccagaaaaatgaaggaagt 369
Query: 228 atgtcagaggaacacttctaccgattttgtttaaactgctcaattccaaaagtttgtcca 287
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 368 atgtcagaggaacacttctgccgattttgttcaaactgctcaattccaaaagtttgtccg 309
Query: 288 tgcagcaaattatcttttaacattttaggtttttttttt--ttttttt 333
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 308 tgcagcaaattatcttttaacattttaggttttttttttccttttttt 261
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_p12.g1 MSMg01no484_p12.g1 CHROMAT_FILE:
MSMg01no484_p12.g1 PHD_FILE: MSMg01no484_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:43 2005
(665 letters)
>mm_chr19_53305382_53306447
Length = 1066
Score = 1139 bits (589), Expect = 0.0
Identities = 637/663 (96%), Gaps = 19/663 (2%)
Strand = Plus / Plus
Query: 5 ggacatgggctacttgccagcatctaattgctaggttaaaggattacttgagtcaaatct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggacatgggctacttgccagcatctaattgctaggttaaaggattacttgagtcaaatct 264
Query: 65 cttgca-tttcttttcccatctaggtcttggcatggtcacacctattaatgaccttcctg 123
|||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgcattttatttttccatctaggtcttggcatggtcacacctattaatgaccttcctg 324
Query: 124 gtgcagatacatcctcgtatgtgaagggagaaaagcttactcgctgcaaacttgccagcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgcagatacatcctcgtatgtgaagggagaaaagcttactcgctgcaaacttgccagcc 384
Query: 184 tctacaggcttgcagatttgtttgggtgggcacacctggcaaatacgtacatctcggtga 243
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tctacaggcttgcagacttgtttgggtgggcgcacctggcaaatacgtacatctcggtga 444
Query: 244 gcgcttcacttttggttcctttttctgaacttctaactagatgccaacagtgatctctca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 gcgcttcacttttggttcctttttctgaacttctaactagatgccaacagtgatgtctca 504
Query: 304 tcattactggaaagtccagttttcagaggtaatgataaatgagcgtcacccccaaggaga 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 tcattactggaaagtccagttttcagaggtaatgataaatgagcgtcacccc-aaggaga 563
Query: 364 agact-aactccccagcttccctttccctctctcttgtctgtggtgctccttcaaagacc 422
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agacttaactccccagcttccctttccctctctcttgtctgtggtgctccttcaaagacc 623
Query: 423 agtgtagaacttcccagaaggagatcatgagtgctcaccccttcccatgatgcatagctg 482
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 624 agtgtagaacttcccagaaggagctcaggagtgctcaccccttcccatgatgcatagctg 683
Query: 483 agcagcctcagtggcactggaaagcactgggcacggagagcagagggcacaggcttcctc 542
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 684 agcagcctcagtggcactggaaagca----------------gagggcacaggcttcctc 727
Query: 543 cctgtgcttgtaatcgttaagagcactttccctcatttgtatgcagacaagcattgaaag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cctgtgcttgtaatcgttaagagcactttccctcatttgtatgcagacaagcattgaaag 787
Query: 603 gtaggaagtgcagatgagagagcatcgggttcttgtctgtcaagtagaagagaggctact 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gtaggaagtgcagatgagagagcatcgggttcttgtctgtcaagtagaagagaggctact 847
Query: 663 gaa 665
|||
Sbjct: 848 gaa 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space: 691680
Effective search space used: 691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
