Query= MSMg01no485_f20.b1 MSMg01no485_f20.b1 CHROMAT_FILE:
MSMg01no485_f20.b1 PHD_FILE: MSMg01no485_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:17 2005
(587 letters)
>mm_chr19_47715589_47716575
Length = 987
Score = 1096 bits (567), Expect = 0.0
Identities = 582/587 (99%)
Strand = Plus / Plus
Query: 1 tttggtgagaagaactctctgcttgccccttaaaagaatagtaatcccgtttgaagggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggtgagaagaactctctgcttgccccttaaaagaatagtaatcccgtttgaagggct 260
Query: 61 ctgcttttgtgacctaatctcactcaaaactctgtgggggggaatatagtttagatctta 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctcttgtgacctaatctcactcaaaactctgtgggggggaatatagtttagatctta 320
Query: 121 ggtttatgcagcttgtcgttcagtgtggaagaaagacatgcatgtcagtagctgacacaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttatgcagcttgtcattcagtgtggaagaaagacatgcatgtcagtagctgacacaa 380
Query: 181 aaagcagatagcacttactaaaaggtgtcacagtctgcatgcttacatgtgatgctcaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcagatagcacttactaaaaggtgtcacagtctgcatgcttacatgtgatgctcaca 440
Query: 241 tggcttgccaacgagataagttaggtagggaccctcttctgttggagagaactgatctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcttgccaacgagataagttaggtagggaccctcttctgttggagagaactgatctta 500
Query: 301 atcttgaacctggggctattgcaaagtatgtggtcttaagtattgaataaaatgtttggg 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 atcttgaacctggggctattgcaaagtatgtggtcttaagtattgagtaaaatgtttggg 560
Query: 361 gatagaaattgtttctgtttttatttttgattattttaagattaaaaagttatgcatatg 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctagaaattgtttctgtttttatttttgattattttaagattaaaaagttatgcatatg 620
Query: 421 catttgcatctgggtgtgggtttgtgcatgtgagtgcagatgcctgtggagactatcaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttgcatctgggtgtgggtttgtgcatgtgagtgcagatgcctgtggagactatcaga 680
Query: 481 tcttgggagctggagttacaggcagttgtgagccacccagtattaggtactaggaactga 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctcgggagctggagttacaggcagttgtgagccacccagtattaggtactaggaactga 740
Query: 541 actggtccatctctccagcccctgggcaatggtttagtcttggttgt 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actggtccatctctccagcccctgggcaatggtttagtcttggttgt 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_f20.g1 MSMg01no485_f20.g1 CHROMAT_FILE:
MSMg01no485_f20.g1 PHD_FILE: MSMg01no485_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:17 2005
(503 letters)
>mm_chr19_47852521_47853417
Length = 897
Score = 870 bits (450), Expect = 0.0
Identities = 479/493 (97%), Gaps = 9/493 (1%)
Strand = Plus / Minus
Query: 1 aatgaaaggctgtgaagcaaagagacagaaggatttgacagtttttaagaactcccaggc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 822 aatgaaaggctgtgaagcaaagagacagaaggatttgacagtttttaagaactccctggc 763
Query: 61 tcaagggacaagggaggggatagagggttttcagaggagaaaccagaaaaggggataaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tcaagggacaagggaggggatagagggttttcagaggagaaaccagaaaaggggataaca 703
Query: 121 tttgaaatgtacataaagaaaatatcgaataagg---aaaaaaaaaaaccagactggact 177
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 702 tttgaaatgtacataaagaaaatatcgaataaggaaaaaaaaaaaaaaccagactggact 643
Query: 178 gttaaaaaaaaaaaagattaaagaataaaagaaagaaaggggggaaaaggtagcttttgt 237
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gttaaaaaaaa-----attaaagaataaaagaaagaaaggggggaaaaggtagcttttgt 588
Query: 238 ttttttcaatcaaatcatgttttgttttgttttctaaatagacagcattgtttttgttgg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttttttcaatcaaatcatgttttgttttgttttctaaatagacagcattgtttttgttgg 528
Query: 298 ataattttaataaaaatgttttgcttccctatgttaaaaaaaaaaaaaaagaactacctg 357
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 527 ataattttaataaaaatgttttgcttccctatgat-aaaaaaaaaaaaaagaactacctg 469
Query: 358 tctctgtctaatctctctcagaaacacctgaactcagactcatcagaagaggaagcagtc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctctgtctaatctctctcagaaacacctgaactcagactcatcagaagaggaagcagtc 409
Query: 418 gtcgatcacaagataattccctggatccaacaaaaaatggaagaggnatttattattatt 477
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 408 atcgatcacaagatgattccctggatccaacaaaaaatggaagaggtatttattattatt 349
Query: 478 attattattatta 490
|||||||||||||
Sbjct: 348 attattattatta 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 897
Length adjustment: 10
Effective length of query: 493
Effective length of database: 887
Effective search space: 437291
Effective search space used: 437291
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
