Query= MSMg01no485_g06.b1 MSMg01no485_g06.b1 CHROMAT_FILE:
MSMg01no485_g06.b1 PHD_FILE: MSMg01no485_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:19 2005
(506 letters)
>mm_chr19_5441752_5442657
Length = 906
Score = 764 bits (395), Expect = 0.0
Identities = 476/513 (92%), Gaps = 21/513 (4%)
Strand = Plus / Minus
Query: 12 tttggaataaaagtgtgtg---g-gtgtgtgtgtag-aggatggttttcagccctgggtg 66
||||||||||||||||||| | |||||||||| | |||||||||||||||||||||||
Sbjct: 595 tttggaataaaagtgtgtgtgtgtgtgtgtgtgt-gtaggatggttttcagccctgggtg 537
Query: 67 g-------------tttttttgatagatctgtttataaagtatagattttctggaactca 113
| ||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 536 gtttttttttttttttttttt--ttgatctgtttataaagtatagactttctggaactca 479
Query: 114 tattctcctggagcctcaggctctggagtgttaggactgcatgcttgtataactatgcgt 173
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 478 tattctcctggagcctcaggctctggagtgttagaactgcatgcttgtataactatgctt 419
Query: 174 gtataactatatgtgtataactatacgtgtataactatgcgtgtataactatgcatgtat 233
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 418 gtataactatgcgtgtataactatacgtgtataattatgcgtgtataactatgcatgtat 359
Query: 234 aaccattcttgtataactatgcgtgtataaccatgtgtgtctaactgtgcctggggataa 293
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 358 aaccattcgtgtataactatgcgtgtataaccatgtgtgtctaactatgcctggggataa 299
Query: 294 tgtggttttgctattgtctgtttcatttggagattggatcttctgcagctcagactagcc 353
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 298 tgtggttttgctattgtctgtttcatttggagactgggtcttctgcagctcagactagcc 239
Query: 354 tcaaacatgctgtatagcagaggctggccttcaactactgctgctcctgacccagtctcc 413
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct: 238 tcaaacatgctgtatagcagaggctggccttcaactactgctgctcctcccccggtcccc 179
Query: 414 gaatgtcaagattacagccctgcgtttgacacccagcttgctgttgtccttctgtttggt 473
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaatgtcaagattacagcgctgcgtttgacacccagcttgctgttgtccttctgtttggt 119
Query: 474 tttgttttcactacggggtcttaccatgtcact 506
|||||||||||||||||||||||||||||||||
Sbjct: 118 tttgttttcactacggggtcttaccatgtcact 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_g06.g1 MSMg01no485_g06.g1 CHROMAT_FILE:
MSMg01no485_g06.g1 PHD_FILE: MSMg01no485_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:19 2005
(615 letters)
>mm_chr19_5288252_5289268
Length = 1017
Score = 1015 bits (525), Expect = 0.0
Identities = 585/617 (94%), Gaps = 20/617 (3%)
Strand = Plus / Plus
Query: 1 tctcattggtgatgggtgccctgcagggcaaggggtgatgaattggtcaagtacttctgg 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tctcattggtgatgggtgccctgcagggcaaggggtgatgaaagggtcaagtacttctgg 260
Query: 61 ggtgccggcaacgtttggcttttggttcacaggctggctacagtacacaccttatatgaa 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ggtgccggcaacgtttggcttttggttcacaagctggctacagtacacaccttatatgaa 320
Query: 121 aattcatgacatgccatattcttattatagttaagtttttcttctagatttattattttt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattcatgacatgccatattcttgttatagttaagtttttcttctagatttattattttt 380
Query: 181 ctattctcttctctcatatttc--atgtgtgttgtagccacagaagccataacagcaagt 238
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctattctcttctctcatatttcatatgtgtgttgtagccacagaagccataacagcaagt 440
Query: 239 cagattctctgaagttgtagtttccagcggctgcgaggcacccagtgtgcgtgaggcacc 298
||||| | |||||||||||||||||||||||| ||||||||||
Sbjct: 441 cagatcccctgaagttgtagtttccagcggct------------------gtgaggcacc 482
Query: 299 cagtgtgcgtgaggcacccagtgtgcgtggcagggtcaaatgcagctcctttgcaagact 358
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 483 cagtgcgcgtgaggcacccagtgtgcatggcagggtcaaatgcagctcctttgcaagact 542
Query: 359 agcaggcactctgattgagtcatctctccagcctcttcttttgttgtttttcaattttta 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agcaggcgctctgattgagtcatctctccagcctcttcttttgttgtttttcaattttta 602
Query: 419 ttttatgtatatgactgtttgtctgcacatacttatatacaccacatgcatgcctgatac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttttatgtatatgactgtttgtctgcacatacttatatacaccacatgcatgcctgatac 662
Query: 479 ctgcacttctaaagagggggtcagttgccctaaaaatgtaggtgctgtttataaaccagc 538
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 663 ctgcacgtctaaagagggggtcagttcccctaaaaatgtaggtgctgtttataaaccagc 722
Query: 539 atgagggaactaggaactgaacgtgggcactctgcaggagtagaagtgctccaaacagct 598
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 atgagggaactgggaactgaacgtgggcactctgcaggagtagaagtgctccaaacagct 782
Query: 599 gagctctctctccagcc 615
|||||||||||||||||
Sbjct: 783 gagctctctctccagcc 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1017
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1007
Effective search space: 609235
Effective search space used: 609235
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
