BAC Information

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BAC

Clone NameMSMg01-485I13
Chromosome19 (Build37)
Map Location 37,628,324 - 37,628,564
singlet/doubletsinglet
Overlap geneExoc6
Upstream geneHectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex
Downstream geneCyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485I13.T7 (MSMg01no485_i13.b1)MSMg01-485I13.TJ (MSMg01no485_i13.g1)
ACCAG564955AG564956
length751726
length of high quality
(start - end)
243 (80 - 322)300 (326 - 625)
definitionCHROMAT_FILE: MSMg01no485_i13.b1 PHD_FILE: MSMg01no485_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:31 2005CHROMAT_FILE: MSMg01no485_i13.g1 PHD_FILE: MSMg01no485_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGTTACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATG
CGCGGAATTCACTAGAATTTCCTTACATCAGCTTTCTGAGTGCCGAGATT
ACAAAGATTGGCCACCAACTCTGGAAAAAAACACTTTCAAAACACACCTG
TGTTCTCTGTCACTGGTTTTCCTAGTATGGTTTTAACTACTGGTTACAGT
TTCAACTTTTAGCCAGTGAATATGTTTCACTTCGAAACTACTGGGGCAGT
ATTGTGAAGCTACTAGTGAAGCTCACAACACACAGCCTTCTGTAGTTACA
AGCATCTTTTGCACACGTTCTTATTTTTGAGCAAACTGAAAGTGAAGTCA
CTTTCAGTAACCGTCGTAGATATAAATAAAGCCTCTGCAGGACATACAGA
AAGGGGAAACAAAAGCATTCAATTCAGTTGTGTTTGATAGTCAGTCTCCT
AGTATTCCATTGTACTTAGCAATCAGATGATTAAATGATTATTCATTAAA
TATCTAGGTTTTAAAGTTAACCGAAGTCTGGTAATTATTTTTAGACATGT
TAAAAAGTGTCAAAATAATGATTCAGTTTATTTTGAGTACAGACTTTGCT
GTCTTAGTAATGGTTTTTACTTGCTGTGAACCCAAGGCAAGTTCTTATAA
AGGACATACGTTTTTAATTTGGGCCAGCTTTTTGGAAGTTAGTTGTTTGC
TTGGGCAAAAGGTTGGTGGTTATTCTCTTGCCCCTTGGCCTTTATTTTTG
G
TATGACATGAAGTGTGAGGCCTGGCNGGCGCGGGCCTACATCACAAGGNG
AACNANAGAAGGTTTCCCAAAAAACGGATAAAACAAAGTAGAAAGAGTTC
ATTCCTGCCCGCTCTATCTTTCCAATCTGCTTTTGAAAGGATTTGCAATT
CAAATTGAGGCTAAACTCTATTTTCACTTAGAAAAACACATTTCTCCAGC
AGTGAAACTCCAGTTCTTGAATATTTCCTTTGCTAAAGAGCCACAGTTTC
ATACTGTGGATGTGAACAAGAAACGGCTAATGATCTCCTTCCCCTCGTGT
CTTCCAGAATCTCTAAAATTGATAATTTAGAGCATGAAGGTGCCCCCACC
CCAACACATGAATATACATATACACTCACACTCTCACACACTTATACACT
CACATACACACTCACATATACTCACTCTTACACATTCACACACTCACACA
CTTTCACTCTCACATGCTCACACTCTTACACACTCACATTTAGACACACA
CGCTCACACATTCACGCACACACTTGCACATTCACACACCCTTACACACT
CCCACATTCACATACTCTTACACACTCACGCATTCACACTCTTTCACACA
ATCGCACACCCTTACGCACTCACATATACACACACTCTTTAACACTTCAA
CTTTCACTCACATACACTCACACCTCTCTCATACACACATACTCTAACCG
GAACCTGTGGCCTTTTCCACTGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_i13.b1 MSMg01no485_i13.b1 CHROMAT_FILE:
MSMg01no485_i13.b1 PHD_FILE: MSMg01no485_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:31 2005
         (243 letters)



>mm_chr19_37628124_37628766
          Length = 643

 Score =  424 bits (219), Expect = e-123
 Identities = 236/243 (97%), Gaps = 4/243 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctttctgagtgccgagattacaaagattggccaccaactctggaaaaaaacactttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctttctgagtgccgagattacaaagattggccaccaactctggaaaaaaacactttca 260

                                                                       
Query: 61  aaacacacctgtgttctctgtcactggttttcctagtatggttttaactactggttacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacacctgtgttctctgtcactggttttcctagtatggttttaactactggttacag 320

                                                                       
Query: 121 tttcaacttttagccagtgaatatgtttcacttcgaaactactggggcagtattgtga-- 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  
Sbjct: 321 tttcaacttttagccagtgaatatgtttcacttcgaaactactggggcagtattgccatc 380

                                                                       
Query: 179 agctactagtgaagctcacaacacacagccttctgtagttacaagcatcttttgcacacg 238
           ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ag--actaatgaagctcacaacacacagccttctgtagttacaagcatcttttgcacacg 438

              
Query: 239 ttc 241
           |||
Sbjct: 439 ttc 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)