BAC Information

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BAC

Clone NameMSMg01-485N19
Chromosome19 (Build37)
Map Location 10,617,046 - 10,617,684
singlet/doubletsinglet
Overlap gene5730453I16Rik
Upstream geneLOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik
Downstream gene2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485N19.T7 (MSMg01no485_n19.b1)MSMg01-485N19.TJ (MSMg01no485_n19.g1)
ACCAG565206AG565207
length726755
length of high quality
(start - end)		640 (73 - 712)565 (82 - 646)
definitionCHROMAT_FILE: MSMg01no485_n19.b1 PHD_FILE: MSMg01no485_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:59 2005CHROMAT_FILE: MSMg01no485_n19.g1 PHD_FILE: MSMg01no485_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAACCGC
GGAATTCTCAAATGTATGCAACATACATAGAGCCAGCAGTTAAGCTCTGA
ATGGGTTCTGTGTTTGTCTCTCTGGGTTTTTGTAACAGATTGAGTTTCGA
AAGGTGTCTACATTAACATATATAGCTTGTGGAAATGTAGGGTAATGAAG
ATGGAACCCGCAAGTGGCTTTGGCCTTCTTTCTTTTTGGGGATGGGCAAG
GTCGGCATGGGTGTCTTGGTCTATCCCTTCATTAAATAGCATCATCACTT
TCCTTGTGAGCTAGCACAATTGATTCTTTACTTAAAATTCAAAACAGCCA
GCACTGGATGTTGTGATCAAACTTGTAATGCTAGAACTCAGGAGACTCAG
GCAAAAGAATTATAAGTTCAGGGTCATTCAGGACCTTGCCTCAAAAAAAA
AAAAATTCACCGAATATGATGTAATATGTGGCTGCAGGCAGATATCAGAG
TTGGAGGCCACTCTGGTCTACAGTGCAAGTTCTAGGACAGCCAGCTGCAC
TGAACAACCCTATCGTGAATAAGAAGGAAGGAAGGAAGGAAGGAAGGACA
GACGGACGGACGGACCAGAAGAGGAGCTGTTACTTTGTCTATGCAAAGCA
GCAGTTGTAGTGTCTAGAGTCTTATTCAGTGTACTTTACTAGCATAGATG
ACTGCCTATCACCATTCCTGGTGGCT

NNNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAACTCCAAGCCAGTC
TGGGCTACACAGGGAGACCTTGTTTCAAAACCAAAACAAAATGTTGTTCT
TCTCTGGGCATCACAGTTCACACATGTTGTCTCTGAGCTTCATCCGTGTA
AGACTGTTGGACTCTGGCTGCCTGATATATGTACTTCATTCCATGTCACT
CTCCAGTTCACAGACATGTGGAAGCAGCTGCCTTTTGACTATCATAAACA
GCGCTGCTGTGTTCATACACAAATGGCTGTTCTGAGTTCCTGTTTTCATT
TCTTCTATGCAGATACAGAAACAGAACTGCTGTGTCATACAGTAAGTGAC
CTGTTGTGGGATCACTGTGCTGCCTCCTACAGTGGGCAAACCACTTCACA
TTCCACAAAAAACATACACGCCTTCACTTCTCCACATTCTCATTAACACT
TACTTCCTATTTTTACTCAGTGTGTGACTCATGTGCATGTTTGTGGTGAC
TGTGATGTATATTCTTATTGGTGTGTATATATGTATGTGTGAGTGTATGG
TATATGTAATGTATATTCTTATTANNATGTGCACATGTATGTGTGAAGAA
TGTGGTATTTATTGATATATATTCTTAGTATGGGGAAATGTATGTTTGAG
AATATGGGAAAATGTGAAGAAAATTTTTTTTTGGGGGGGGAGAATGATAA
GGGNA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_n19.b1 MSMg01no485_n19.b1 CHROMAT_FILE:
MSMg01no485_n19.b1 PHD_FILE: MSMg01no485_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:59 2005
         (640 letters)



>mm_chr19_10616846_10617885
          Length = 1040

 Score = 1100 bits (569), Expect = 0.0
 Identities = 622/645 (96%), Gaps = 11/645 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacatagagccagcagttaagctctgaatgggttctgtgtttgtctctctgggtttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atacatagagccagcagttaagctctgaatgggttctgtgtttgtctctctaggtttttg 260

                                                                       
Query: 61  taacagattgagtttcgaaaggtgtctacattaacatatatagcttgtggaaatgtaggg 120
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 caacagattgagtttcgaaaggtgtctacattaacatctatagcttgtggaaatgtaggg 320

                                                                       
Query: 121 taatgaagatggaacccgcaagtggctttggccttctttctttttggggatgggcaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgaagatggaacccgcaagtggctttggccttctttctttttggggatgggcaaggt 380

                                                                       
Query: 181 cggcatgggtgtcttggtctatcccttcattaaatagcatcatcactttccttgtgagct 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cggcatgggtgtcttggtctatcccttcattaaatagcaccatcactttccttgtgagct 440

                                                                       
Query: 241 agcacaattgattctttacttaaaattcaaaacagccagcactggatgttgtgatcaaac 300
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcacaattgaagcattacttaaaattcaaaacagccagcactggatgttgtgatcaaac 500

                                                                       
Query: 301 ttgtaatgctagaactcaggagactcaggcaaaagaattataagttcagggtcattcagg 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtaatgctagaactcaggagactcgggcaaaagaattataagttcagggtcattcagg 560

                                                                       
Query: 361 accttgcctcaaaaaaaaaaaaattcaccgaatatga-----tgtaatatgtggctgcag 415
           |||||||||||||||||||||||      ||| | ||     ||||||||||||||||||
Sbjct: 561 accttgcctcaaaaaaaaaaaaag-----gaaaa-gaaaaaatgtaatatgtggctgcag 614

                                                                       
Query: 416 gcagatatcagagttggaggccactctggtctacagtgcaagttctaggacagccagctg 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gcagatatcagagttggaggccactctggtctacagtgcaagttctaggacagccagctg 674

                                                                       
Query: 476 cactgaacaaccctatcgtgaataagaaggaaggaaggaaggaaggaaggacagacggac 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 675 cactgaacaaccctatcgtgaataagaaggaaggaaggaaggaaggaaggacaggcggac 734

                                                                       
Query: 536 ggacggaccagaagaggagctgttactttgtctatgcaaagcagcagttgtagtgtctag 595
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agacggaccagaagaggagctgttactttgtctatgcaaagcagcagttgtagtgtctag 794

                                                        
Query: 596 agtcttattcagtgtactttactagcatagatgactgcctatcac 640
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 agtcttattcagtgtactttactagcatagatgactgcctatcac 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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