BAC Information

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BAC

Clone NameMSMg01-485P02
Chromosome19 (Build37)
Map Location 5,304,201 - 5,304,828
singlet/doubletsinglet
Overlap geneGal3st3
Upstream geneAdrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2
Downstream geneEG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485P02.T7 (MSMg01no485_p02.b1)MSMg01-485P02.TJ (MSMg01no485_p02.g1)
ACCAG565267AG565268
length734746
length of high quality
(start - end)		504 (73 - 576)653 (80 - 732)
definitionCHROMAT_FILE: MSMg01no485_p02.b1 PHD_FILE: MSMg01no485_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:05 2005CHROMAT_FILE: MSMg01no485_p02.g1 PHD_FILE: MSMg01no485_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCATTGTCGTCAATATAGTGAGTTTCAGGACAGCCAAG
GCTACTTAGACACCCTATTTCAAAACAAACAAACAAACAAACAAACAAAC
AAACAAACCATCAAACAATAATAAAATAAGGGGTCTAGAGAGATGGCTCA
ATGGTTAAGAATACATACTACTCTTGCAGAGGCCCAGAGTCTGTTTACCA
GCACCCATGTTGGGCAGCTTACAAGCCCTTGTAACTTCAGCTCCAGAGGT
TATGATACCGCTCGCCTCCTCTGGTACTTATAGTGGCATATACATAGTTA
AATAGAAAACAAATCTTGAAAATACTTTTTAGGGCTGGAGAGATAGTTCA
ATGGCTAAGAGTACTGGCTCTTGTAGGAACTGAATCTGATTTCTCAGTAC
TGACTTGGTGGTCTCAACCATGGATAACTCCTTCTAGGGGATCCAACACC
TTTTCAGACCTCTGCAGGCACCAGGCTTGAACACGGTACACATAGCATAC
ATGTGTAGAGGGCACAAGGTTCTTGTGGTTTCAGATAAGCACTAGGGAAA
CGAAGAATGTTAAACACATAGGATTGTCTCTTGAACAGAAAGGATAAATA
CTTGTTTTCCCCACAGAATGCTAGCAGTGAGTGTTGTTAATATCCTGGTG
ATCTACGCTATCTGCAGGGGCCAGGCCACACCTG

NCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATCCGCCCGCCTCTGCC
TCCCGAGTGCTGGGATTAAAAGTGCATCACCATGCCTGGCTCTATCTAAA
GCATTTTTTTTTCTTTTTAAGACAGAGTTTCTGTTTGTAGGCCTGGATGT
CCTGGAGCTCGATCTGTGGACCAGGCTGGCTTCAAACGCACAGAAATCTG
CCTGCCTCTGCCTCCCAGATGCTGGGATTAGAGGTGTGCGCCACCACTGC
CTGTCCTAGGGTTATTTTTAAATGCAGAAATAGTGTAAAGGACAATGACC
CTTTGAGACCCTTGTGGGAATCTTACTTTAAATGTTTAGAAATTGAGGAC
CTGAGAAGACTGGGGCCAACTCACTCACCAATCTTGACTGTGTCTTTTTC
CTCATTTCTGCTCTTTAACTAGTTCAGCACTCTTTTGGAGAGGAGTGGGG
TAACAGACTTGCAGCAACACATTTATTGTTCTTGTTACATGTTTCTATTA
AGGTCTTTGGAGATGCACTCATTCGTGTATGTGTGCATTTCTGGAGCTTT
TGCTTTGTGCTAGGTATTGTTCTAAACAAGCATAGCCCTTATGCCACCTT
CACCTCTGTTCCTAGATCCTGAAACAAGGATGTTTGGGATTACCGGTCAG
CTATCAGATCTGGACAGTCTTTGAATCACACCTGAATCTTCTGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_p02.g1 MSMg01no485_p02.g1 CHROMAT_FILE:
MSMg01no485_p02.g1 PHD_FILE: MSMg01no485_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:05 2005
         (653 letters)



>mm_chr19_5303777_5304828
          Length = 1052

 Score = 1185 bits (613), Expect = 0.0
 Identities = 625/629 (99%), Gaps = 2/629 (0%)
 Strand = Plus / Minus

                                                                        
Query: 26   gagtgctgggattaaaagtgcatcaccatgcctggctctatctaaagca-tttttttttc 84
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1052 gagtgctgggattaaaagtgcatcaccatgcctggctctatctaaagcattttttttttc 993

                                                                        
Query: 85   tttttaagacagagtttctgtttgtaggcctggatgtcctggagctcgatctgtggacca 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  tttttaagacagagtttctgtttgtaggcctggatgtcctggagctcgatctgtggacca 933

                                                                        
Query: 145  ggctggcttcaaacgcacagaaatctgcctgcctctgcctcccagatgctgggattagag 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  ggctggcttcaaacgcacagaaatctgcctgcctctgcctcccagatgctgggattagag 873

                                                                        
Query: 205  gtgtgcgccaccactgcctgtcctagggttatttttaaatgcagaaatagtgtaaaggac 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  gtgtgcgccaccactgcctgtcctagggttatttttaaatgcagaaatagtgtaaaggac 813

                                                                        
Query: 265  aatgaccctttgagacccttgtgggaatcttactttaaatgtttagaaattgaggacctg 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  aatgaccctttgagacccttgtgggaatcttactttaaatgtttagaaattgaggacctg 753

                                                                        
Query: 325  agaagactggggccaactcactcaccaatcttgactgtgtctttttcctcatttctgctc 384
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 752  agaagactggggccaactcagtcaccaatcttgactgtgtctttttcctcatttctgctc 693

                                                                        
Query: 385  tttaactagttcagcactcttttggagaggagtggggtaacagacttgcagcaacacatt 444
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 692  tttaactagttcagcactcttttggag-ggagtggggtaacagacttgcagcaacatatt 634

                                                                        
Query: 445  tattgttcttgttacatgtttctattaaggtctttggagatgcactcattcgtgtatgtg 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633  tattgttcttgttacatgtttctattaaggtctttggagatgcactcattcgtgtatgtg 574

                                                                        
Query: 505  tgcatttctggagcttttgctttgtgctaggtattgttctaaacaagcatagcccttatg 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573  tgcatttctggagcttttgctttgtgctaggtattgttctaaacaagcatagcccttatg 514

                                                                        
Query: 565  ccaccttcacctctgttcctagatcctgaaacaaggatgtttgggattaccggtcagcta 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513  ccaccttcacctctgttcctagatcctgaaacaaggatgtttgggattaccggtcagcta 454

                                         
Query: 625  tcagatctggacagtctttgaatcacacc 653
            |||||||||||||||||||||||||||||
Sbjct: 453  tcagatctggacagtctttgaatcacacc 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space:   670006
Effective search space used:   670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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