Query= MSMg01no487_h12.b1 MSMg01no487_h12.b1 CHROMAT_FILE:
MSMg01no487_h12.b1 PHD_FILE: MSMg01no487_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:05 2005
(464 letters)
>mm_chr19_4320903_4321766
Length = 864
Score = 857 bits (443), Expect = 0.0
Identities = 452/455 (99%)
Strand = Plus / Plus
Query: 6 aatcctcagttatcagctgttctgagcaacacaaatgggtctctagtctactgggagaga 65
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatcctcagttaccagctgttctgagcaacacaaatgggtctctagtctactgggagaga 265
Query: 66 ctatgttctaatctagtaaccaagtctaaagattttcatggtgtcaaggcatcaaagtta 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctatgttctaatctagtaaccaagtctaaagattttcatggtgtcaaggcatcaaagtta 325
Query: 126 taacgtttactttggtgttaaaaccaatagctggaacgccagatggcactgtcccacatc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taacgtttactttggtgttaaaaccaatagctggaacgccagatggcactgtcccacatc 385
Query: 186 tttaattccagcactcaggaggcagagacaggcagaaaacctagtctgtaaagtgagttc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttaattccagcactcaggaggcagagacaggcagaaaacctagtctgtaaagtgagttc 445
Query: 246 ccagacagacaaacacacaaacaaaacaaaaagtccaaatgctggaattgggtgtgatgg 305
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 446 ccagacagacaaacacacaaacaaaacaaaaaatccaaatgctggaattgggtgtgatgg 505
Query: 306 cacatattccattccagcattcagaaaggataggaaggctgatctttttgatttctaaag 365
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 506 cacatattccattccagcattcagaaagaataggaaggctgatctttttgatttctaaag 565
Query: 366 agttcaaggccacaaagtggccatttcaagacaaagtacacatgcaggcacgtacaacaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agttcaaggccacaaagtggccatttcaagacaaagtacacatgcaggcacgtacaacaa 625
Query: 426 ctgctgggcactttagggagatagcttaagaaatt 460
|||||||||||||||||||||||||||||||||||
Sbjct: 626 ctgctgggcactttagggagatagcttaagaaatt 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_h12.g1 MSMg01no487_h12.g1 CHROMAT_FILE:
MSMg01no487_h12.g1 PHD_FILE: MSMg01no487_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:05 2005
(564 letters)
>mm_chr19_4422582_4423546
Length = 965
Score = 1007 bits (521), Expect = 0.0
Identities = 554/565 (98%), Gaps = 1/565 (0%)
Strand = Plus / Minus
Query: 1 tacaggcatgatgtcatgctcatggtcacaagcacttgggaggctgaagcaagaagaaag 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tacaggcatgatgtcatgctcgtggtcacaagcacttgggaggctgaagcaagaagaaag 763
Query: 61 aggaactgtgtgcccagcctgacagtgcattctgggggtt-cgggggagggggtgcctgg 119
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 762 aggcactgtgtgcccagcctgacagtgcattctgggggttgggggggagggggtgcctgg 703
Query: 120 acctgaacgtctatgcatccaaggcactgtttcaccattgagctatatgctcagccctga 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 acctgagcgtctatgcatccaaggcactgtttcaccattgagctatatgctcagccctga 643
Query: 180 aagttgagcagcttggactaagaacccagtggatccagtcatcccagtggacttttccac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aagttgagcagcttggactaagaacccagtggatccagtcatcccagtggacttttccac 583
Query: 240 gtgatgtttgtgctacccacctgctgaggctcagccctgttatctgagctgtgatccctc 299
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtgaggccagtgctacccacctgctgaggctcagccctgttatctgagctgtgatccctc 523
Query: 300 acctggaggtcttttgaatggagctgctgggctggatggtgggtgcctgttctcgttgag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 522 acctggaggtcttttgaatggagctgctgggctggatggtgggtgcctgttcttgttgag 463
Query: 360 tatcatgtgtatcaatcaaaggaatgggctggttcaggttcatgacataatgtgatgttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tatcatgtgtatcaatcaaaggaatgggctggttcaggttcatgacataatgtgatgttc 403
Query: 420 cgggttggttttggctctcagcgtggcaacattaagaaatacatacttggatttagctga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 402 cgggttggttttggctctcagcgtggcaacattaagaaatacatacttggatttagccga 343
Query: 480 tggagcttaccaaaagctttgactgactgtattcaaattacaaccgaagaaattcagatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tggagcttaccaaaagctttgactgactgtattcaaattacaaccgaagaaattcagatt 283
Query: 540 tcagtctagagcacctgggcagaga 564
|||||||||||||||||||||||||
Sbjct: 282 tcagtctagagcacctgggcagaga 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space: 529070
Effective search space used: 529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
